BAC Information

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BAC

Clone NameMSMg01-459F03
Chromosome6 (Build37)
Map Location 136,351,798 - 136,352,131
singlet/doubletsinglet
Overlap geneE330021D16Rik
Upstream geneGrin2b, EG668137, LOC545887
Downstream geneEG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459F03.T7 (MSMg01no459_f03.b1)MSMg01-459F03.TJ (MSMg01no459_f03.g1)
ACCAG544943AG544944
length800770
length of high quality
(start - end)
308 (45 - 352)334 (84 - 417)
definitionCHROMAT_FILE: MSMg01no459_f03.b1 PHD_FILE: MSMg01no459_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:12 2005CHROMAT_FILE: MSMg01no459_f03.g1 PHD_FILE: MSMg01no459_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTTTACCAAGGGGATTGGAGGCTGGCAAGCCCTCACCTCTAACT
GAGGAACTAATGATAGTTTATGGATTCTGGGGGAAGGAGTGACCAATTTT
CTTTAAGAGTATGGCCCCTCGTAAGTTGACCACACTCCAATGGAAACTCC
ATACCCAGGAGTATCTGGACAGTACAAATTAGACCGGGTGGGTTATCTTC
AGAAAGAGGACACAGTATTGGAAGAAGTGGGTTGAATCTTGGAGAACTTA
GGGGAGGGATGGGGGAAATATGCTTAAATAACATTGTATGAAACTCTCAC
AGAACATTAATAAACACTTTTTTGACTGCATGCTCGAAGACAGTGTCTGA
TATGGGGTGCGACCCAGCACTCTGCCTGACGTGGTCTGTCATAGGGAGAT
TCCTGCCGCACCTCTCCCTTTGTTTGTAACTTTTCTGTCTATTTCGTCAC
CCTTTACTTCCTTCCGCTACTGCTTTTGGGCCTCGCTCTCTCCTTCTCTG
CTCATCTACCCTTACTACATCCATGTTTTTTTTGTCCCTTAGTCCTTCCC
TGTTTTCTTCTTCATTGTTAACGCAATAGATACCCCCATTAAACGATTAC
GTCTGTCTGTTGCACACCCGATTGCTCTTCCCCCCTCGTTTTCTTTATTT
CTTGCCGTATCGTTGATTTTTTCTGGTTGTCATCCCCCCGATTGTTCTGC
CGCANTTGCTTTCTCCTTTTCGCCTTTTGCACCTCTTCTCTCCGTTATTG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGTGTTATATTGTT
ACAGTAGCGTTGGACAACTATTCAATGAGAAAAATTAATTTCTTCTCATG
GAGAAAATGAAGTCTCTAGCCTGGGTGGAGATCCCACATCAGTTGGGCTG
GCCTATTGCCTGGCTAAGAGACAACCTCTTGGGAAGATGGATTCTCCATG
CTAAAGGGGACAGCAAGAATATTTATTCCTTTCTAAGATAATACATTTTT
GATCAGGCGTCTTGCCGGGCCACTTCGCTTCCACACTAGTCTCGGAGGAG
TGGAGAGGAAGGATGTCGTCAGGTCTTAAGGTTGAGCTGGAGTTCCTAGC
ATCCATCTTCCACAAGGACCACTATCGGCTGCGCATCGTGAGCTGGTATC
TGGATGACCTATAGTGTCAGTTCCTGGTGCTGGATGCCACTGTGGGTAGT
CTTTTCTCGTCTCCACCGTTCTCCCTTTTTTGCTTCATCCCCGGAGTCCT
ACCCATCTTTCCCTGGTGACGCTGCGTTTTTTCTCTCTCACTGATTCCGA
CCCGAATTTTTATTCCTCTAATCCCCCTGACACCTTTTATATTTTTACAC
CCCCTCCTAATCACTTTCACCGCCATCCGTCTCATTACCGTGTATTTCCT
TCCATTTTTTGATTACCTGACCCTCTTTCTTTCTCTCTTTCCTTCCTCTT
TTTCCCTTCTTTTCCGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_f03.g1 MSMg01no459_f03.g1 CHROMAT_FILE:
MSMg01no459_f03.g1 PHD_FILE: MSMg01no459_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:12 2005
         (334 letters)



>mm_chr6_136351598_136352331
          Length = 734

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctgtgttatattgttacagtagcgttggacaactattcaatgagaaaaattaatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gcctgtgttatattgttacagtagcgttggacaactattcaatgagaaaaattaatttct 475

                                                                       
Query: 61  tctcatggagaaaatgaagtctctagcctgggtggagatcccacatcagttgggctggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tctcatggagaaaatgaagtctctagcctgggtggagatcccacatcagttgggctggcc 415

                                                                       
Query: 121 tattgcctggctaagagacaacctcttgggaagatggattctccatgctaaaggggacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tattgcctggctaagagacaacctcttgggaagatggattctccatgctaaaggggacag 355

                                                                       
Query: 181 caagaatatttattcctttctaagataatacatttttgatcaggcgtcttgccgggccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caagaatatttattcctttctaagataatacatttttgatcaggcgtcttgccgggccac 295

                                                                       
Query: 241 ttcgcttccacactagtctcggaggagtggagaggaaggatgtcgtcaggtcttaaggtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 294 ttcgcttccacactagtctcggaggagtggagaggaaggatgtcgtcaggtcttaaggct 235

                                             
Query: 301 gagctggagttcctagcatccatcttccacaagg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gagctggagttcctagcatccatcttccacaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)