CACACATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAA
TCCGCGGAATTCCACCTGATTTCGAGATCTGCAATGCTGTGTTGATATGG
AATATTTCAGATAATTTTCCAAGCTCCTTTCCCATTCATCTCACTTGAAA
TATATTTCAAATACTGAATATTGATATAAATATGTTAGGAATATTTTCCT
TTCTCTCACAAAGAACCCATCAGTTGAAACACCAAATGTCAATAAAGACA
GTTATCATTTTAAAGCAGTAAGTAAGAATGTCTAAATCACAAAAGCCAGT
ATAATTACTGTTCTTGGCACAGTTTATTTTGAAGGGAGATTTTTAATTGA
AATAGTCTTCTAGGTATGAAGATACAGGCTGGATTTAAGCAAGGAAATTC
CTTCGTTTCACTGTTGCTTTTCATCACCTTGGTATACCTCATTTCAAGGA
ACTCTTTTGTTAACACTTCCTTATTTTATTTGACACTACACACAGCTTAT
CTATTCAATCTTCTCCTATTCCCCTTTATTTCGTACGCCTTCCACTATTT
TTTTCTTTTATCTCTTCCCACCCTCTCCTTCCGTCTTTCTTTTTACTTTC
CTGTCATATTCCCTAAATTATTCTCTATCTATTCTTAACCCGCTCCTTCT
CTATTTTCCCTCTTATACACAACTTCTGTATTTTTTTTAATCCCTTCCCT
TATAAATTTCCTTCCATCATCTTTTCTTAACCTCCTCTCCCTCTTTTGTA
TTTTTCTTTATACCCACCTTATTGCCAG

GCGCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGCACCAAGCACTATG
AAAATTGTTAAGCCCTTACTCAGCAGTTCTAGATCAGTAAGGAGATGGTT
TCAGGACAACTACAAATTTATAGCTAACATGTTGTTCAATGTATCACCAT
GGTAAAGTTGTCAGTGGCTAATGACTGGGCAGGGAAACAGAGGCGGGATT
TTAGATTTCCTGGGCAAGGGATCATGGCAAAAAGAAGGTTATAGAATTGC
CATGTCAGAAAAAGAATAGAATGCAAGAGTGAAAGCTGTGAAGACAGAGA
ACCAGCCATGTAAGAATTAGCCACCATGGGGTTTTACAGCAGATTAATAA
ATTACCACTTTCAGAACACTGATCAGGTAATCTATCTGGGATCATCCCTG
AAGAAATTGATTCTTCCTCTCTCACCAGCCCACTGATTACTCCCTGCCCT
GCTGCTCATTGATCATGTTCAATGACCCCTCGACGAACATTTACCCCTTT
TATATATTTCTTTTTCCCCCGTTCTTCTTTTTATATCCTTCACTGGAACA
CTTCGCATTGCCATTATTGTCCCTCTGCTTTCTCCCTCCTATTTTTTCCG
TTCTCCTCTAATTTTCTCCTCATTCTTCTTTTTCTTTTTCTCCTTCCTTT
CTCCTTTCACTACCACCTTGTTTTTTTCTCCCTTTCCCCTCATTTTCACC
CCCCTTTTTCTCTATTTN

Query= MSMg01no461_a03.b1 MSMg01no461_a03.b1 CHROMAT_FILE:
MSMg01no461_a03.b1 PHD_FILE: MSMg01no461_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:26 2005
         (288 letters)



>mm_chr6_109939088_109939775
          Length = 688

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcaatgctgtgttgatatggaatatttcagataattttccaagctcctttcccattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcaatgctgtgttgatatggaatatttcagataattttccaagctcctttcccattcat 260

                                                                       
Query: 61  ctcacttgaaatatatttcaaatactgaatattgatataaatatgttaggaatattttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacttgaaatatatttcaaatactgaatattgatataaatatgttaggaatattttcc 320

                                                                       
Query: 121 tttctctcacaaagaacccatcagttgaaacaccaaatgtcaataaagacagttatcatt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tttctctcacaaagaacccatcagttaaaacaccaaatgtcaataaagacagttatcatt 380

                                                                       
Query: 181 ttaaagcagtaagtaagaatgtctaaatcacaaaagccagtataattactgttcttggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagcagtaagtaagaatgtctaaatcacaaaagccagtataattactgttcttggca 440

                                                        
Query: 241 cagtttattttgaagggagatttttaattgaaatagtcttctagg 285
           ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtttaatgtgaagggagatttttaattgaaatagtcttctagg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no461_a03.g1 MSMg01no461_a03.g1 CHROMAT_FILE:
MSMg01no461_a03.g1 PHD_FILE: MSMg01no461_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:26 2005
         (244 letters)



>mm_chr6_110102042_110102685
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagcaccaagcactatgaaaattgttaagcccttactcagcagttctagatcagtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagcaccaagcactatgaaaattgttaagcccttactcagcagttctagatcagtaag 262

                                                                       
Query: 61  gagatggtttcaggacaactacaaatttatagctaacatgttgttcaatgtatcaccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatggtttcaggacaactacaaatttatagctaacatgttgttcaatgtatcaccatg 202

                                                                       
Query: 121 gtaaagttgtcagtggctaatgactgggcagggaaacagaggcgggattttagatttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaagttgtcagtggctaatgactgggcagggaaacagaggcgggattttagatttcct 142

                                                                       
Query: 181 gggcaagggatcatggcaaaaagaaggttatagaattgccatgtcagaaaaagaatagaa 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 141 gggcaagggatcatggcaaaaagaaggttatagaattgccatgccagaaaaagaatagaa 82

               
Query: 241 tgca 244
           ||||
Sbjct: 81  tgca 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)