BAC Information

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BAC

Clone NameMSMg01-461D09
Chromosome6 (Build37)
Map Location 114,236,007 - 114,236,248
singlet/doubletsinglet
Overlap geneSlc6a1
Upstream geneCpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
Downstream geneHrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461D09.T7 (MSMg01no461_d09.b1)MSMg01-461D09.TJ (MSMg01no461_d09.g1)
ACCAG546387AG546388
length745742
length of high quality
(start - end)
242 (75 - 316)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no461_d09.b1 PHD_FILE: MSMg01no461_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:43 2005CHROMAT_FILE: MSMg01no461_d09.g1 PHD_FILE: MSMg01no461_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTATAATTGCGGCCGCTAAACGATCACTAATTTCAAAACAGCGCGGA
ATTCNCAGAGTTGCTGAATACAGAAAGCCTCAGGTTAGAAACAGGGTGGG
GAGAACGGAGAGCTATGGTCCCAGGGAACAGAGTTCAATGTGGGAAGGCA
AAGGCATCCTAGAGAGGAGCAGGGGAGGCAGCTGCATGTGAGCACACTTG
ATGTCACTGAACCACGCTGCAGAAGTGCTCAGAACCCTAAGTCCTGTGTT
ATGGACATGGAGCCACAGCTGCAGAGCCAGGAGAGGCCTGCAGCATTGGA
ATGGGGCCTTCCTTTCATGATTTCTTCAAGGCGAGGACATTTCCTAGAGC
CCTGTGTATCACAGAGGCAGGAACTTAAGTGGATCCAGTATATGCTGGAG
GCACTCACTCTGCATGAAGACTCCCTCCCTGTACGCAGCCTCAGACACTG
TGTCCACTAGGACCCTCCCACATATGCCCCGTCTCTGAGGATCTTAATCT
AGTACCCTATTATTGGACAATTGTCTGGAGATTATATTCATTCTGCATGA
TATCTCCATGTTAAATGTGAATGTATGCGCCATGCTTTGTTCACCAACTG
ATTGCGTAGTACCCTTTGTAATGTCAGTGCACAAAGGTGATGTTTTTCTT
TTTCCATGGCTATACCCTTTTGCCCCCCTCTCTTATGTATGTCATCATTA
TCTCCTGCTTCTTATATAACAATTCTCTTCCCCTACAGTTCTTTT
TCAATGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATGTAAACAGAGGAACAATTTC
CAAGAACCCTCATCCCCACGCCAGCATTGCAACTACAGGGACAACTGTCC
TTGCCTGCATATTGACAATGTGCCACAGAACGTGCCCCGTGATACACTTC
TGTGTCATTTAATTTGTATAAGCTCCTGTGAGCTGTGTATACCTATCCCT
GTGTACTTGTTGTATCAGAGGACAATAAATGGGGCTGAGTCTGAACTCAG
CCATCAAGTCTCTAAGTCTCTTGCAGGTGATACCGGCTGCGGTGAAGCAC
AGGCACAGCCCACTATAGAAACTACAGGGTCTCCCGAGTGCGTCCCCAGT
ATCTGATCCTAACCACAGCTCGAGAAGACCAGGCATCACTCAGTTGTTAT
TGTCTCTTGACTTATGGCCAAGCTGAAGCTTGCAGACCTCTGCCGTTATG
ATGCATATCTGATATTCTACTTGACGTCATCATCTTATCCCAACACGTTT
TTGCCATGTCCTGCACTTCCTTTAACGCTGCCATTGTTTTTCTGTATCTA
GCCTCCCACTTTCCCTAATCTTCCCGTTTATCTTTTCTTTTCCTCCCTTC
CTTTTTATTTCCCCCGCCCCACTTTCTCCTCTGCTAATTTCTCTTACGTC
TTTACCCCATTTTTCGTTTTATCCCTCCTTTCTTTTCCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_d09.g1 MSMg01no461_d09.g1 CHROMAT_FILE:
MSMg01no461_d09.g1 PHD_FILE: MSMg01no461_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:43 2005
         (242 letters)



>mm_chr6_114235807_114236448
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgtaaacagaggaacaatttccaagaaccctcatccccacgccagcattgcaactac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 agatgtaaacagaggaacaatttccaagaaccctcatcctcacgccagcattgcaactac 260

                                                                       
Query: 61  agggacaactgtccttgcctgcatattgacaatgtgccacagaacgtgccccgtgataca 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agggacaactgtcattgcctgcatattgacaatgtgccacagaacgtgccccatgataca 320

                                                                       
Query: 121 cttctgtgtcatttaatttgtataagctcctgtgagctgtgtatacctatccctgtgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctgtgtcatttaatttgtataagctcctgtgagctgtgtatacctatccctgtgtac 380

                                                                       
Query: 181 ttgttgtatcagaggacaataaatggggctgagtctgaactcagccatcaagtctctaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttgtatcagaggacaataaatggggctgagtctgaactcagccatcaagtctctaag 440

             
Query: 241 tc 242
           ||
Sbjct: 441 tc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)