BAC Information

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BAC

Clone NameMSMg01-461J08
Chromosome6 (Build37)
Map Location 111,597,115 - 111,790,422
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461J08.T7 (MSMg01no461_j08.b1)MSMg01-461J08.TJ (MSMg01no461_j08.g1)
ACCAG546672AG546673
length784773
length of high quality
(start - end)
244 (77 - 320)363 (76 - 438)
definitionCHROMAT_FILE: MSMg01no461_j08.b1 PHD_FILE: MSMg01no461_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:14 2005CHROMAT_FILE: MSMg01no461_j08.g1 PHD_FILE: MSMg01no461_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,790,179 - 111,790,422)(111,597,115 - 111,597,477)
sequence
CTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGATCCG
CGGAATTCCCTATCTTTTTCTCTCATTCCCTTTCCTTTCCTTCCTTCTCC
ACCTTCCCTCTTTTCTTCTCCTCTCTTTCCCTTCCCCTCCCTTCCTATCT
TTCCCTGTCTTCCGTTTTGATGAGTATTTAATAAGCACTTTCTTTGTACC
CAGTATTGAACTCACTATTGCCTAGTACAACATCAGTATTACTGAAAAGC
ATTCTTCCTTATTGAGAGTCGTTTCCAAGATCTAGCTATCTTTGAAACAC
AGTCGGCATTTGCAAGTGGCTTTGTTTCTGATTATGTACCCAGAGTCTAG
CCCATCTGATGAAGTCATATATTTCTTGTGCTAGAGGAGTTTAGCTTCGG
GATCTTAACTCCTCTTTTATAGCCAGCCATGTGTTAACCTGCCATTAGTT
TTCCATAATTCCTTGAGCATTTTTTCTTCAGCACTGGAGTTTGAACCCAG
GCTTTATGTATGCTAGACAAGTGTTCTATCCTTGAGCTATAGTCCCTTGC
TTGCCAATTTCTAAACAGTTTGTCACTTCCTATATGAGCTTTTTTTTTTT
TCTTTTTCTTAAAGTAACCTACATCTCTTGCCGCTATTTACTGACATCTT
CCCTTATCGAACACTATGTTTCAACACCTTGTTGCCCACAATTAACTGTC
TCACCCTCACAACCCTCCCTATTCTTTTGTTGTTCCTTATCCCTCCACAT
TCGTTGACCCTCCCCCACATCTTTGTTTTCTCCN
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTTTAATGAGCTGCCACAGCCCA
CTTGCAAGGTGGGTTGGAATTTGCATTGACTCAGCTTTCTTTGAGCCCTC
CATTCTTCTGTAAATAACCCTTACCCACATTCCTAAAAATCACTCTGATG
ATCTCAGTGGCTAGCCAAGTTAGATTTTAGTGGAATCATTACTTGGTTCT
ATTGGCAGCTCCTTATCTGAGCCGAGTGGACATTTGTTTGTATCTCCAAA
AGAAAAGTCATTCAGCATGATTCTATGTCCTGAGTTCATAGGAGACAATT
TAAAATATCTAGAATTCGTTAAGGCATACTCAGATTTTGTCATTCAAGGC
AACCTCCTTAAAGCTGGCATCAGTCCATTCTAACAAGGTGACTTGCAGTG
TATCATCCCAGAGATTAAGTTATTGAGCCCGGACAGATATGGTTCACTCA
TTACAGATGCATCGTATGTTGTATTCATCCACCTTCTAGGCTAAACAAAG
TGTATATAAATGGAGCTTCCTTTCCCTGCTCGATTCATTTATCCCCCCAT
TTCTTTTTTAACTGATCCTTCTCATATTTTTTCGTTGTTTTCCCCACACT
TCGCTTTCCACATTTTCTCTTTTTCTCTCCCCTCATATTTCCTTCCTAAT
CATTCACCGCTCTAAATTTCCTTTTCTACTATATCTCTCTCCTCTCTTTA
CTTACCTCTACTTCTTATACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_j08.b1 MSMg01no461_j08.b1 CHROMAT_FILE:
MSMg01no461_j08.b1 PHD_FILE: MSMg01no461_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:14 2005
         (244 letters)



>mm_chr6_111789899_111790542
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctttcctttccttccttctccaccttccctcttttcttctcctctctttcccttccc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 524 tccctttcctttccttccttctccaccttccctctttccttctcctctctttcccttccc 465

                                                                       
Query: 61  ctcccttcctatctttccctgtcttccgttttgatgagtatttaataagcactttctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctcccttcctatctttccctgtcttccgttttgatgagtatttaataagcactttctttg 405

                                                                       
Query: 121 tacccagtattgaactcactattgcctagtacaacatcagtattactgaaaagcattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tacccagtattgaactcactattgcctagtacaacatcagtattactgaaaagcattctt 345

                                                                       
Query: 181 ccttattgagagtcgtttccaagatctagctatctttgaaacacagtcggcatttgcaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 344 ccttattgagagtcgtttccaagatctagctatctttgaaacacagtcggcatttgaaag 285

               
Query: 241 tggc 244
           ||||
Sbjct: 284 tggc 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no461_j08.g1 MSMg01no461_j08.g1 CHROMAT_FILE:
MSMg01no461_j08.g1 PHD_FILE: MSMg01no461_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:14 2005
         (363 letters)



>mm_chr6_111596915_111597677
          Length = 763

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtttaatgagctgccacagcccacttgcaaggtgggttggaatttgcattgactcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtttaatgagctgccacagcccacttgcaaggtgggttggaatttgcattgactcagc 260

                                                                       
Query: 61  tttctttgagccctccattcttctgtaaataacccttacccacattcctaaaaatcactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctttgagccctccattcttctgtaaataacccttacccacattcctaaaaatcactc 320

                                                                       
Query: 121 tgatgatctcagtggctagccaagttagattttagtggaatcattacttggttctattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatgatctcagtggctagccaagttagattttagtggaatcattacttggttctattgg 380

                                                                       
Query: 181 cagctccttatctgagccgagtggacatttgtttgtatctccaaaagaaaagtcattcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctccttatctgagccgagtggacatttgtttgtatctccaaaagaaaagtcattcag 440

                                                                       
Query: 241 catgattctatgtcctgagttcataggagacaatttaaaatatctagaattcgttaaggc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgaatctatgtcctgagttcataggagacaatttaaaatatctagaattcgttaaggc 500

                                                                       
Query: 301 atactcagattttgtcattcaaggcaacctccttaaagctggcatcagtccattctaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atactcagattttgtcattcaaggcaacctccttaaagctggcatcagtccattctaaca 560

              
Query: 361 agg 363
           |||
Sbjct: 561 agg 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)