BAC Information

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BAC

Clone NameMSMg01-461N03
Chromosome6 (Build37)
Map Location 69,766,759 - 69,767,118
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44
Downstream geneIgkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461N03.T7 (MSMg01no461_n03.b1)MSMg01-461N03.TJ (MSMg01no461_n03.g1)
ACCAG546853AG546854
length750771
length of high quality
(start - end)
217 (74 - 290)360 (78 - 437)
definitionCHROMAT_FILE: MSMg01no461_n03.b1 PHD_FILE: MSMg01no461_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:34 2005CHROMAT_FILE: MSMg01no461_n03.g1 PHD_FILE: MSMg01no461_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTAGTTTCCCTTTTAGGGTCACTTATATATATTGTCATATCGT
CTGCAAAAAGTGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCCTTG
ATCTCCTTTTGTTGTCTAATTGCTCTGGCTAGGACTCCAAGTACAATGTT
AAATATGTAGGGAGAGAGTGGACAGCCTTTTCTAGTCCCTGATTTTAGTG
GTATTGCTTCCAGCTTCTCACCATTTACTTTGATGTTGGCTACTGGCTTG
CTGTATATTGCTTTTATCTTGTTTATTCATGGGCCTTGAATCCCTGATCT
TTATAATATTTTTATCGTGAATGGGCGTTGGACTTTGTTTTATGCTGTCT
CAGTTTCTTTCGAGATGACCCTGCTGTTTTTGCCCCTGAATTTCTTTACA
TTTTCCACTATTTTGACTCATTTTCCGCACATCTTACCCTTTTTTGTTCT
CCCTTAGATGCTTTCCTATTTTTCCTTTCTCTTCTCTATGTTTTTCTCTT
CTTCTTCTCCCTTCTTTATTTCCTTTCTTTCATCACTATGCAATTATTTC
TCCTATTTTCTCCCTCTTCCATTTTTTCTTTCTCTCATCCTTTTTATTAA
TCTACTCCATACCTTTCCTTTTTTTTTTTTTATTCATCTCTTCGCGCCCT
CATCTATCATTATTCTTCTTTTCTATCTTCTCTTTCCCCTCTCTCCCTTT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGTTTCTATGTAGAGAAG
AAATCTGGCCCCTATAATTAGCATGTGTCCAAGTGTCTGTGCCACACTTT
GATGAAAGTATAAAATAAATAAGCATTTTGATTGTCTATGTTTATCGGCA
TGATTTTATTGCTTAGTCAAAGCATGCATATATGGTTTTACTACATGAAA
TATATTCATGTTAATAGATATTATTACTGTTAGTTGTAAACATTTTTGAT
ATATGTCTGAATGGAAAATCTGTGACGACATACTTAAGAGTCACCCTCCT
GATTAATTTTTTTCAGATTAATCAGTTGCTTAACGTATCCACCTACCTCT
TCTTTCTCATACCTCTCCTGTGCCCATCATTAGCTTCAGGCCACAAGTAG
GTGTCAGTCTCACCCTGTAAAATCTCTGTTTCCCATATAATGCTACTGTG
CACATGTATAACTTTTGCTCACTCTACACTTTTGGGAAATATACACCAAT
TCTTGGACACCACTTATAAATATAAATTTTCCCAAAAAAAGTTTCTAACC
GGTTACTTTCTTTGGATTTCCTCTTTTCTCCCCCCCAATTTTTATTTCTT
GGCCCGGCCTTTAATATTATATTATTCGGCCTCACCTGTTTACCCCTCTA
TCCTTCTTTTCAATATCCATTTTGCTTGCCTCTATTTCTTCTTCTCCTCC
ACTCTGTCGTTTCTCCACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_n03.g1 MSMg01no461_n03.g1 CHROMAT_FILE:
MSMg01no461_n03.g1 PHD_FILE: MSMg01no461_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:34 2005
         (360 letters)



>mm_chr6_69766559_69767318
          Length = 760

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcagtttctatgtagagaagaaatctggcccctataattagcatgtgtccaagtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 atttcagtttctatgtagagaagaaatctggcccctataattagcatgtgttcaagtgtc 501

                                                                       
Query: 61  tgtgccacactttgatgaaagtataaaataaataagcattttgattgtctatgtttatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgccacactttgatgaaagtataaaataaataagcattttgattgtctatgtttatcg 441

                                                                       
Query: 121 gcatgattttattgcttagtcaaagcatgcatatatggttttactacatgaaatatattc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 gcatgattttattgcttagtcaaagcacgcatatatggttttactacatgaaatatattc 381

                                                                       
Query: 181 atgttaatagatattattactgttagttgtaaacatttttgatatatgtctgaatggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgttaatagatattattactgttagttgtaaacatttttgatatatgtctgaatggaaa 321

                                                                       
Query: 241 atctgtgacgacatacttaagagtcaccctcctgattaatttttttcagattaatcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctgtgacgacatacttaagagtcaccctcctgattaatttttttcagattaatcagtt 261

                                                                       
Query: 301 gcttaacgtatccacctacctcttctttctcatacctctcctgtgcccatcattagcttc 360
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 260 gcttaacctatccacctacctcttctttctcatacctctcctgtgtccatcatcagcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)