Query= MSMg01no462_g01.b1 MSMg01no462_g01.b1 CHROMAT_FILE:
MSMg01no462_g01.b1 PHD_FILE: MSMg01no462_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:22 2005
(348 letters)
>mm_chr6_134272788_134273535
Length = 748
Score = 507 bits (262), Expect = e-148
Identities = 334/372 (89%), Gaps = 28/372 (7%)
Strand = Plus / Plus
Query: 1 agatgaaaccatgctcagaagaagaaaagggaggagaaaagggagggagaggaggaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agatgaaaccatgctcagaagaagaaaagggaggagaaaagggagggagaggaggaaaag 240
Query: 61 agaaagagatccactttcttttgttctttctccctcccttcctc--tccttccctccctc 118
|||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||
Sbjct: 241 agaaagagatccactttcttttgttcttcctccctccctccctccctccctccctccctc 300
Query: 119 ccttcctccctccct---tcc-tccctctctc--------------cccttgttatttct 160
||| ||||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 301 cctccctccctccctccctccctccctctctctccctccctcccttcccttgttatttct 360
Query: 161 ctcaggcttctcctctttcctccctgcatgtcctcttccctccctctgtagtttaccaaa 220
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctcagtcttttcctctttcctccctgcatgtcctcttccctccctctgtagtttaccaaa 420
Query: 221 cctttgttaagccgttcctctctta----ttttgtattacggcatataagaaggtaaatt 276
|||||||||||| |||||||||||| | | | ||||||||||||||||||||||
Sbjct: 421 cctttgttaagctgttcctctcttacaaat---g-acaacggcatataagaaggtaaatt 476
Query: 277 ctaggccatgctttttatggagttcacaaccagaaagaaaaacgattttaaaccagagct 336
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctaggccatgctttttgtggagttcacaaccagaaagaaaaacgattttaaaccagagct 536
Query: 337 gagttcaaaatt 348
||||||||||||
Sbjct: 537 gagttcaaaatt 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_g01.g1 MSMg01no462_g01.g1 CHROMAT_FILE:
MSMg01no462_g01.g1 PHD_FILE: MSMg01no462_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:22 2005
(330 letters)
>mm_chr6_134455588_134456317
Length = 730
Score = 601 bits (311), Expect = e-176
Identities = 323/327 (98%)
Strand = Plus / Minus
Query: 1 caggatatcatttccagaaatcttcctccatgttcacagatctcaggacagtaggttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 caggatatcatttccagaaatcttcctccatgttcacagatctcaggacagtaggttgtc 468
Query: 61 ttgcagctaatcctagggtttctgagtttcgtaggtacaggaaatgtggattctgttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttgcagctaatcctagggtttctgagtttcgtaggtacaggaaatgtggattctgttgtt 408
Query: 121 tctggtcttagcagcttttgtaaatgattggctttgttttgagtgaagttcctgcctaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tctggtcttagcagcttttgtaaatgattggctttgttttgagtgaagttcctgcctaaa 348
Query: 181 ttttctacagcctgttttctgcaaaccaaaattatataagatccacataggtaaacctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 347 ttttctacagcctgttttctgcaaaccaaaattatataagatccacataggcaaacctgg 288
Query: 241 cagtcttatgtctggaaagcaaaatgcacgtgggtgcatgcatgcatgtgtgcaactttt 300
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cagtcttaagtcaggaaagcaaaatgcacgtgggtgcatgcatgcatgtgtgcaactttt 228
Query: 301 tggtgttttgggtgttggatttggtgg 327
|| ||||||||||||||||||||||||
Sbjct: 227 tgttgttttgggtgttggatttggtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
