BAC Information

Click to search

BAC

Clone NameMSMg01-462O14
Chromosome6 (Build37)
Map Location 17,495,709 - 17,651,480
singlet/doubletdoublet
Overlap geneMet, Capza2
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
Downstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462O14.T7 (MSMg01no462_o14.b1)MSMg01-462O14.TJ (MSMg01no462_o14.g1)
ACCAG547687AG547688
length746730
length of high quality
(start - end)
520 (79 - 598)504 (75 - 578)
definitionCHROMAT_FILE: MSMg01no462_o14.b1 PHD_FILE: MSMg01no462_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:05 2005CHROMAT_FILE: MSMg01no462_o14.g1 PHD_FILE: MSMg01no462_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,650,962 - 17,651,480)(17,495,709 - 17,496,212)
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAATGCG
CGGGAATCTCCTCTTTCTCAAGAGCTCCACTCAGGGGAAGTCCCCATTAA
CTGGCTCTGCTCCACTTCACATTATAAGAAAGTGCACTCATGTTACAAAT
TCCTTATTTAGCCTGACACACACTTGTACATCTTTCTCATCATAGTACCT
ATGACACAGTGTCCTATGCGAAAGCAGCAATGAAGAAACTAATTGTGTAT
ACATAATTATGTATGCAATGTAATTGCATATGCAAATCAGCACATAAGTA
TATAAAGCACACTTGCCACTCTCTAATGAGGTTAAATGATTAAAGTTGCC
ACATGCAATCAAGACATTGAAGACTATGCCAGAAGACTAAGATAGCTTGC
CAAGAGATCATCACTCTCTGTTCAACTATACCCAATCCCTCAGTCTCCTC
CCAGGCCCTGCCGCAGATCCCCAGCTGCAGCCTCCCTTCCCCCTGCCCAG
GTCTCCCGTGGTATTCTACTACCTACTACCTACTACCTAGTGCATGCTAC
CCTACCATCCCTTCCTTAACTTCCTCCCCCAACTCTTCATTGTATTCCAG
CCTCTAAAGTCAGAGGCACTCACTTCAGTCTTCAACTAAGAAGGTCAGTA
TAACATGCAACATACAACCATCACACTTTTGAACTTCTGGAGAGGAACCA
GAAACCAAGGAAAAAAACCCCCTCCCAACAAAGAAAAACCAGAATN
ATTCTTCAATGAAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCGCAGAATTCCCTCCGATATGTGAGTAAGGGCC
TGCGCCCTTTCTAGACCTAACCAACAAGTTGTCATTTCAAGCCCCAAAGT
GACCCGTGAGATTTATGTGCTTCTCTGTGGAATTACCCTGTGCAGCTGAC
CTAGATCAATGGCCTGTTCCTACCGCCTCTGGAAGTACAATAAGGGCAGG
TTCTGCCTGTGTTCATTTCTTTAGTGGAGCCGTGGAATATAAAGATGTGC
TTTCTTTCAGATACTCCNATCCTTAGAATCTCAGGCCAACCTATCTTGAA
ATCCATGAGGCACTACAGGAAAAGCAGTTTTGGACACCCTCAAGAGCTTG
GAAAACAAAGTTGTTAGGAGCTGTTCCTTGTCCATAAGAAAGACAGTAAT
AGGTTTTGATAGCTCTCTCCTCTAAGTAACAGCCTATTTAATAAATTACT
ACTCATTAAGTCTTGATATGAAAAAAATGTATTCAGGTTTGCACTTCTTT
CCCAAGACTAATGATTGCTTTCTTGAACAATACGTTTGACGTTCTAACAT
TTAACATTCCTGGCGTTAACTCAAGTTAACTATGCCCAGTTTGGTTTTTG
TTTATTACTCCCCCATTAAATCACCTATATTATTTTAAATATTGCTTTTG
TTCCTCTTCTAATCCTAATTGTAGGTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_o14.b1 MSMg01no462_o14.b1 CHROMAT_FILE:
MSMg01no462_o14.b1 PHD_FILE: MSMg01no462_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:05 2005
         (520 letters)



>mm_chr6_17650955_17651874
          Length = 920

 Score =  988 bits (511), Expect = 0.0
 Identities = 517/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctcaggggaagtccccattaactggctctgctccacttcacattataagaaagtgcactc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctcaggggaagtccccattaactggctctgctccacttcacattataagaaagtgcactc 467

                                                                       
Query: 62  atgttacaaattccttatttagcctgacacacacttgtacatctttctcatcatagtacc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atgttacaaattccttatttagcctgacacacacttgtacatctttctcatcatagtacc 407

                                                                       
Query: 122 tatgacacagtgtcctatgcgaaagcagcaatgaagaaactaattgtgtatacataatta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 406 tatgacacagtgtcctatgcgaaagcagcaatgaagaaactaattgtgtatacgtaatta 347

                                                                       
Query: 182 tgtatgcaatgtaattgcatatgcaaatcagcacataagtatataaagcacacttgccac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgtatgcaatgtaattgcatatgcaaatcagcacataagtatataaagcacacttgccac 287

                                                                       
Query: 242 tctctaatgaggttaaatgattaaagttgccacatgcaatcaagacattgaagactatgc 301
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 actctaatgaggttaaatgattaaagttgccacatgcaatcaagacattgaagactatgc 227

                                                                       
Query: 302 cagaagactaagatagcttgccaagagatcatcactctctgttcaactatacccaatccc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cagaagactaagatagcttgccaagagatcatcactctctgttcaactatacccaatccc 167

                                                                       
Query: 362 tcagtctcctcccaggccctgccgcagatccccagctgcagcctcccttccccctgccca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tcagtctcctcccaggccctgccgcagatccccagctgcagcctcccttccccctgccca 107

                                                                       
Query: 422 ggtctcccgtggtattctactacctactacctactacctagtgcatgctaccctaccatc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ggtctcccgtggtattctactacctactacctactacctagtgcatgctaccctaccatc 47

                                                  
Query: 482 ccttccttaacttcctcccccaactcttcattgtattcc 520
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 46  ccttccttaacttcctcccccaactcttcattgtattcc 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no462_o14.g1 MSMg01no462_o14.g1 CHROMAT_FILE:
MSMg01no462_o14.g1 PHD_FILE: MSMg01no462_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:05 2005
         (504 letters)



>mm_chr6_17495509_17496412
          Length = 904

 Score =  953 bits (493), Expect = 0.0
 Identities = 501/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctccgatatgtgagtaagggcctgcgccctttctagacctaaccaacaagttgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccctccgatatgtgagtaagggcctgcgccctttctagacctaaccaacaagttgtca 260

                                                                       
Query: 61  tttcaagccccaaagtgacccgtgagatttatgtgcttctctgtggaattaccctgtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaagccccaaagtgacccgtgagatttatgtgcttctctgtggaattaccctgtgca 320

                                                                       
Query: 121 gctgacctagatcaatggcctgttcctaccgcctctggaagtacaataagggcaggttct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gctgacctagatcaatggcctgttcctaccgcctctggaagtacaataagggcagggtct 380

                                                                       
Query: 181 gcctgtgttcatttctttagtggagccgtggaatataaagatgtgctttctttcagatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgtgttcatttctttagtggagccgtggaatataaagatgtgctttctttcagatac 440

                                                                       
Query: 241 tccnatccttagaatctcaggccaacctatcttgaaatccatgaggcactacaggaaaag 300
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctatccctagaatctcaggccaacctatcttgaaatccatgaggcactacaggaaaag 500

                                                                       
Query: 301 cagttttggacaccctcaagagcttggaaaacaaagttgttaggagctgttccttgtcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttttggacaccctcaagagcttggaaaacaaagttgttaggagctgttccttgtcca 560

                                                                       
Query: 361 taagaaagacagtaataggttttgatagctctctcctctaagtaacagcctatttaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagaaagacagtaataggttttgatagctctctcctctaagtaacagcctatttaataa 620

                                                                       
Query: 421 attactactcattaagtcttgatatgaaaaaaatgtattcaggtttgcacttctttccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attactactcattaagtcttgatatgaaaaaaatgtattcaggtttgcacttctttccca 680

                                   
Query: 481 agactaatgattgctttcttgaac 504
           ||||||||||||||||||||||||
Sbjct: 681 agactaatgattgctttcttgaac 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)