BAC Information

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BAC

Clone NameMSMg01-463L13
Chromosome6 (Build37)
Map Location 56,144,320 - 56,144,429
singlet/doubletsinglet
Overlap genePde1c
Upstream geneC330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463L13.T7 (MSMg01no463_l13.b1)MSMg01-463L13.TJ (MSMg01no463_l13.g1)
ACCAG548306AG548307
length831740
length of high quality
(start - end)
112 (79 - 190)249 (80 - 328)
definitionCHROMAT_FILE: MSMg01no463_l13.b1 PHD_FILE: MSMg01no463_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:15 2005CHROMAT_FILE: MSMg01no463_l13.g1 PHD_FILE: MSMg01no463_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGTTTTTTTCTATAATTGCGGCGCTAAACGAATACTATATTCACGACGG
GCGGAATCCTATGTGTTTCGTCCAGTTGGTCTGGAGGATCTGCTTCCTGG
GATTGTTTGACACCTTGGACTCTAATAATCTTTTCTCCTCCTTTTTGGCT
TAGGTTCCCTAAGCCTTGGAGGGGTGTGGTGGAAGGNGTTGTTTTTCGTT
TGTGTGTTGGATTTGTTTTGGGCTGGCGGTCCCGGCGATTTTTCTTCTTT
TTTTTTTTCCCGCGGTCCGGAGTTAAAGTTGGTAGATGATTAAATGGAAG
GGGGCCGAATAGGAGACATTTTGAGTGCATTTCGACCCGCAAAAGGGGGG
GGTGCCGCCACGGTTTTTTTTTCCCCCCCCCCCGAGAGCTAGGCTGCATC
TCCCACTTCACTTGTGTATGTTTTTTCCCCCCCCCGCGCTCTTTTGCTAG
CTTCTTATTTTTTTATCTTATTATATTACTCCCTTCTACATCATTTTTTT
CCCTTCTTCCCACTTTTTATTCATTCTCCGTTTTCTTTTTTATACCCCCT
TTATTAATCTATTACACCCTTCCCTTGACTGTTACTTCTCTTTTTTTTTA
CTTTCTCTTTCTGCCATTTATCTCTATCTTTTCTGTATATGTCTTTGTGA
TTCGGTGTAATTTTTAGTTACCTTATTTTCTCTTTCTGATTTTTTTTATG
TTATCCGTGTTATTATTGCCTTGCGAGTCTATTTTTTTGTCTTTCTCATT
TTTTCAACGACCGCTGTTATGTTTTTTTCCTCCTTTATTTTCATTTTTCC
TTTTTATTACTTTTCTTATATGTTGTTTATT
TATTTTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCAGAAATTCTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGAGTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCAGTTCCTCATATTTTTGTTTATAGTACTACTGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACATATGCTCCACTACGCCCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATGC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGGCAAATGAATGTACCTGTAGGGCATCCT
CCTGAGTGAGGTAACACATTTCTCAAGGAATTCCTTCCATATGTACTCAC
TGAAAAATGGATATTATTCTCTTTCCCAAGAAATCCCAGAATTTAATATT
AGTTTGCTAACCTCATGAAATTCTTCAATATGTAATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_l13.b1 MSMg01no463_l13.b1 CHROMAT_FILE:
MSMg01no463_l13.b1 PHD_FILE: MSMg01no463_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:15 2005
         (112 letters)



>mm_chr6_56144120_56144633
          Length = 514

 Score =  190 bits (98), Expect = 3e-53
 Identities = 107/110 (97%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctggagga-tctgcttcctggg-attgtttgacaccttggactctaataatcttttct 58
           |||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 310 gtctggaggactctgcttcctgggcattgtttgacacctcggactctaataatcttttct 251

                                                             
Query: 59  cctcctttttggcttaggttccctaagccttggaggggtgtggtggaagg 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cctcctttttggcttaggttccctaagccttggaggggtgtggtggaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 514
Length adjustment: 8
Effective length of query: 104
Effective length of database: 506
Effective search space:    52624
Effective search space used:    52624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)