BAC Information

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BAC

Clone NameMSMg01-463O07
Chromosome6 (Build37)
Map Location 96,520,300 - 96,520,543
singlet/doubletsinglet
Overlap geneC630007B19Rik
Upstream geneSuclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O07.T7 (MSMg01no463_o07.b1)MSMg01-463O07.TJ (MSMg01no463_o07.g1)
ACCAG548438AG548439
length760742
length of high quality
(start - end)
244 (72 - 315)242 (76 - 317)
definitionCHROMAT_FILE: MSMg01no463_o07.b1 PHD_FILE: MSMg01no463_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:29 2005CHROMAT_FILE: MSMg01no463_o07.g1 PHD_FILE: MSMg01no463_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTGCAAGAGAATCC
GCGGAATTCTCAGTGTTGCAATAATGTGCTCAGAACACCTGTGCATGCCT
AGTTGGTTGTTCATACTTCCGGCAAGAAAGTCAGCAGGCCCCTCCTAAAG
GAGAAATTGGGAAGACGTTTTAGCAATCTGTTTGAGATAACATCTAGAAA
CTTATATGACATAAAAGGAAAGTTTTTAAAATGAGAATTACTTGCTGTAA
GTCTTAGAGTCTGTGAACACAGAACTTTTTCAGCAGCTATTTTTTTACTA
CTCCACATACAAGGTGCTAATTTCTTTTATGGTCTTTTGAACTTTATCCT
GGAATCATCTTAGTAGTCTGTGGCACTTGACAAGCTACGATATATGAACA
ATACTTAGGAGCTTATGCACACGAGCTTGTCATTTCTCAGACATTATTTA
AAGTGGTTCTCAACTTCCATTTCACTTTGAAACAATAATTTATAATAATA
CTTAATCACCCGCATAATGAGTCATATCATTTACATGACTGCAATGCTTT
CCAGTCTACATTTTTCTGGCCCAATCATCGTTCATATTGGTCTCTATATT
TCTTATTCAGTTCAAATTTCGACAATGTATTTTTTACTTCCCGGCTCAAT
GTTCTTTTTTTTTTATCTTTTCTCGAGTTCACACACCTCCCCTCTTATCT
TCTAATTCACGGGTTCTTTCTTACTTTCTATACCTGGTCTATATTTGTTT
CCCTTTCCTG
TTTCGATGATGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCTTGCATCCCTGGAATAAAACCTATTTG
GTCATGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAA
TTTTATTGAGGAGTTTTGTTATCTTTATTCATAATAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAG
TGGCTTCATAAAATGAGCTGTGTAGAGTACCTTCTACTTCTATTTGGTGA
AATAGTTTGTGCAGAACTGGAATTATATCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAATCTGTCTGCTCCTGGGCTTTTGTTGGCTGAGAGACTAT
TAACAACTGCTTCTATCTCTCTAGGGGATATGGTAATGTTTTAATTTTCA
ATTTGATCCTGACTCTTCTCTGGTATCTGGTAACTGCCCAGAAATTTTGT
CTTTTTTATCCCGGCCTTTCCCAGCTTCGGCCGATTACATACCTTTCTGT
ATACAGGATCTGTATGTACGTTTTGTCAATTTCCTTATAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o07.b1 MSMg01no463_o07.b1 CHROMAT_FILE:
MSMg01no463_o07.b1 PHD_FILE: MSMg01no463_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:29 2005
         (244 letters)



>mm_chr6_96520100_96520743
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgtgctcagaacacctgtgcatgcctagttggttgttcatacttccggcaagaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 taatgtgctcagaacacctgtgcatgcctagttggttgttcatacttccagcaagaaagt 260

                                                                       
Query: 61  cagcaggcccctcctaaaggagaaattgggaagacgttttagcaatctgtttgagataac 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaggcccctccgaaaggagaaattgggaagacgttttagcaatctgtttgagataac 320

                                                                       
Query: 121 atctagaaacttatatgacataaaaggaaagtttttaaaatgagaattacttgctgtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctagaaacttatatgacataaaaggaaagtttttaaaatgagaattacttgctgtaag 380

                                                                       
Query: 181 tcttagagtctgtgaacacagaactttttcagcagctatttttttactactccacataca 240
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 381 tcttagagtctgtgaacacagaactttttcagcagctattttttcactaccccacataca 440

               
Query: 241 aggt 244
           ||||
Sbjct: 441 aggt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)