BAC Information

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BAC

Clone NameMSMg01-464D06
Chromosome6 (Build37)
Map Location 17,651,812 - 17,652,232
singlet/doubletsinglet
Overlap genenone
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464D06.T7 (MSMg01no464_d06.b1)MSMg01-464D06.TJ (MSMg01no464_d06.g1)
ACCAG548674AG548675
length738766
length of high quality
(start - end)
244 (77 - 320)421 (83 - 503)
definitionCHROMAT_FILE: MSMg01no464_d06.b1 PHD_FILE: MSMg01no464_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:53 2005CHROMAT_FILE: MSMg01no464_d06.g1 PHD_FILE: MSMg01no464_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCATCTATATTTGCGNGCGCTAATAGATCACTACATTCAAATATGCGC
GGAATTCTTTGTTTTTTCTTGAACCCCATTTTTTAAGGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTGTCTGATTTAGGATAGGCAAAGATCCTTTCCAAATCTGTTGGTGGCC
TTTTTGTCTTATTGATGGTGTCTGTTGCCTTACAGAAGCTTTGCAATTTT
ATTATTTCTCATTTGTCGATTCTCGATCTTACAGCACAAGGCATTGCTGT
TCTATTCAGGACTTTTTCTCTTTTGTTTTATCTTCGAGGCTTTTCCCCAC
TTTCTCCTCTATTAGTTTCAGCGTCTCTGGTTTTATGTGGAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACTAGGATATAGGAATGGATCTATTTGT
ATTCTTCTATACGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAATAT
GTTGTCTCTTCTCCATCGGATTGGCCTATCTCCCCCGTCAATTATCAAGT
GCCCACACGTGTGTGGTTTCATTTCTGGGTCTTCAATTTTATTCCATTGT
TTCACCTGCCTGTCGCTATACCTTCACTTACGTCATGTACCCCACACATT
TTTCCTTTCTCTTAACATTCATGGTCGTATCCTCCTTTATCTTCCCCCCC
TCCTACCATTCCTCCCCTATCTCCCTCTTTTTTATCTG
TTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGAAAAATCCCAGGGTTCTGATGATAAA
TACAGACCTTGCAGAGAATATCTCACAGACGCAACAAAACTCTGGTAATG
GAAAATGAATTTGAAAATTGACAGGGAAGAAAATGAACGTAGAACTAATC
CCGATTAGCGTCGATGCTTAACTCTGAAGTTAATGGAGAAACTTTACATA
ATTTTGTGAGTTTCTGAAAATAGGATGAACTTTTAGCAAGATCATAAAAA
TTATCCAAAGACCTATTATTAGTTGGTCCTCCTTTGAATTAATTTTCCAG
AAAATCAGAAAAATTATTTCCTATTACAGTATTCATATAGGTATTATTTT
GAAAAACAATAGGTTTGTAAAAAAAAGAAATAAAAGTCACTTACTTTATA
TTGTGCTATGCAGAGCAATTTCTCATCTACCATATGCTGTATGGTTTTGG
GCACTGCACTTCAAACACCTTGCATAGTACACCTGCAAAGTAATATGCAC
CTTTGCCATTATTTGTATTAATGAGCTAAAGCAACTTTCCCCATTTAATG
TTGATAAATGTCAACTTAATACAGCTTCGACATCCTCACTTCATTCTGTT
TTATAAAATACTTTTGTTTTTTGCTATATTCCCATGCTAAAGCTTCCCAC
GTCATTTTTCTTCTTAAACCCCACTCTTGCCCTTTTTTACACCAGCTCTA
CCAGTCTTTCATTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_d06.g1 MSMg01no464_d06.g1 CHROMAT_FILE:
MSMg01no464_d06.g1 PHD_FILE: MSMg01no464_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:53 2005
         (421 letters)



>mm_chr6_17651612_17652432
          Length = 821

 Score =  698 bits (361), Expect = 0.0
 Identities = 406/421 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggttctgatgataaatacagaccttgcagagaatatctcacagacgcaacaaaactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cagggttctgatgataaatacagaccttgcagagaatatctcacagaggcaacaaaactc 260

                                                                       
Query: 61  tggtaatggaaaatgaatttgaaaattgacagggaagaaaatgaacgtagaactaatccc 120
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tggtaattgaaaatgaatttgaaaattgacagggaagaaaatgaacgtagaattaatccc 320

                                                                       
Query: 121 gattagcgtcgatgcttaactctgaagttaatggagaaactttacataattttgtgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gattagcgtcgatgcttaactctgaagttaatggagaaactttacatgattttgtgagtt 380

                                                                       
Query: 181 tctgaaaataggatgaacttttagcaagatcataaaaattatccaaagacctattattag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tctgaaaataggatgaacttttagcaagattataaaaattatccaaagacctattattag 440

                                                                       
Query: 241 ttggtcctcctttgaattaattttccagaaaatcagaaaaattatttcctattacagtat 300
           |||||  |||  ||||||||||||||||||||| |||||| |||||||| |||| |||||
Sbjct: 441 ttggttttccagtgaattaattttccagaaaattagaaaatttatttccaattagagtat 500

                                                                       
Query: 301 tcatataggtattattttgaaaaacaataggtttgtaaaaaaaagaaataaaagtcactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatataggtattattttgaaaaacaataggtttgtaaaaaaaagaaataaaagtcactt 560

                                                                       
Query: 361 actttatattgtgctatgcagagcaatttctcatctaccatatgctgtatggttttgggc 420
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 actttatagtgtgctatgcagagcaatttctcatctaccatatgctgtgtggttttgggc 620

            
Query: 421 a 421
           |
Sbjct: 621 a 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)