BAC Information

Click to search

BAC

Clone NameMSMg01-464K05
Chromosome6 (Build37)
Map Location 107,291,195 - 107,291,387
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464K05.T7 (MSMg01no464_k05.b1)MSMg01-464K05.TJ (MSMg01no464_k05.g1)
ACCAG549005AG549006
length784747
length of high quality
(start - end)
193 (73 - 265)193 (121 - 313)
definitionCHROMAT_FILE: MSMg01no464_k05.b1 PHD_FILE: MSMg01no464_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:28 2005CHROMAT_FILE: MSMg01no464_k05.g1 PHD_FILE: MSMg01no464_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGTATCCGC
GGAATTCAGTCTTTGCTAACCATGGCTATACCTAGAGACAGGAATGGGCT
GAGGCAGGTGAAAAAGGGGAAATTCAAACGGAGAAAAGGGACTTACTTTT
CAATTTGGGGGCACAAATATGCATCTTTAGGACCATTAAGATGAAACTGG
ACCTTTTCATTGCTAACATATACTAAAGACAGCTGACATCTTCATCTGGT
ATTCTGTTATCTACATGTTCATAATTAACATTTACTTAGAGTGGACATCA
TTCATTCAGTGAACCTTTTTTAACCATTACCAGGCCAAGTCTTTGCCCCT
CAGGTAATTTACGATTTACTTCCACCGTTTTCCTTTCTCCTCTTCACGCC
TTTTTTGCGCTGTGCTTCTGGCCTGACGTTTTTCTCTGCCGATTACCATT
CCTTTCTGCATGTTTTATTCTAGACATCTACATGTCTTATTTCTCAATCC
CTTTACTATTGCCTCTTTTACACCATCCGCCTATTTTCTTTCGAACAATG
CTTTTCGTTCACGCATACTCTATTTATTCTCCTCCTCCTTTGCTTTTCCT
ACCCTTTTTCCTCCCCCTTCTTCCCCCCTTTTTCCTTTCCCGTTTTTCCC
TCCTTTTTTTTTTACTTCTATACCGCTTGCATGTTCTCTCTTTCCCTCCC
TCCCCCATTATCCTTATTCCCCCATCTTCTGCTCTCTCTTTTCGCCTACC
CCTGTTACGCCTTCTTCCCTCTCCGCTCGCTTCT
GCCTCATGATAGTGGTAGGCTGGNGGNCGCCTGGTTTCGTATGTGGGNGA
CCNANAGAAGTTTCCAGCACAGCTGGANCANNANAGAAGGGGACTACTTG
AGAGAGATTTGGAGGTGTGCCTTTGTTGGAGGAAGCATATCACTCAGTTG
GGTTTTGGGGTTTCAGAAGCCCAAGCCAGTTCCAGTGGCTCTCTTTTCCT
GGTGTCTGCAGATTTGTATATAGAACACTTAACTGGTTCTCCAGCTCCTT
ATCTGTCTGCATGCCACAATGCTTCCTACCACAATGACAATGGGCTAAAC
TGGAGAAACTATAATTTTTTTTTAAACGCTCTCATCTATAAGAGGGTCTG
TGTCTATGTTGTCTCTTGACAGCAGCAGAGTACCGACTAATACACATACA
TTATAAGACTTAATCTTCCCAGCAGCCCTATAGTATCAGTGTGGAGCCAT
CATTCTAGATAGAAGAATCTCGTAAGGCAGAGATCTGCTAACTGCTGTCT
GGTATTTCACAGCGTGGCTTTGTTTATCAATGTGCTTATAGAATATTCCA
CCAAGTCCTATGTTAGGTTCCTCGCGTGCGCTCTTCCCTAGAACGACCGT
CATCTATTATTCCGACAATTTGCACATCCGCTTTCTGACCTGACTGAATT
ATTACTTTTTTGCTTCTCTGATAGCTTCCCCTTTGTTTCCGCCTTTTGCC
GCATTTTTTTATCCCCTACTCCCCTTCCTTTTGCTTTACTAATCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_k05.b1 MSMg01no464_k05.b1 CHROMAT_FILE:
MSMg01no464_k05.b1 PHD_FILE: MSMg01no464_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:28 2005
         (193 letters)



>mm_chr6_107290995_107291587
          Length = 593

 Score =  342 bits (177), Expect = 6e-99
 Identities = 189/193 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctatacctagagacaggaatgggctgaggcaggtgaaaaaggggaaattcaaacgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggctatacctagagacaggaatgggctgaggcaggtgaaaaaggggaaattcaaacgga 260

                                                                       
Query: 61  gaaaagggacttacttttcaatttgggggcacaaatatgcatctttaggaccattaagat 120
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 261 gaaaagggacttacttttcaatttgggggcacaaatatgcatctttcggaccatcaagat 320

                                                                       
Query: 121 gaaactggaccttttcattgctaacatatactaaagacagctgacatcttcatctggtat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 321 gaaactggaccttttcattgctaacatatactaaagacagctgaaatcttcatctggcat 380

                        
Query: 181 tctgttatctaca 193
           |||||||||||||
Sbjct: 381 tctgttatctaca 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)