BAC Information

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BAC

Clone NameMSMg01-464P09
Chromosome6 (Build37)
Map Location 143,088,372 - 143,088,603
singlet/doubletsinglet
Overlap geneEtnk1
Upstream geneSlco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik
Downstream geneD6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P09.T7 (MSMg01no464_p09.b1)MSMg01-464P09.TJ (MSMg01no464_p09.g1)
ACCAG549253AG549254
length742735
length of high quality
(start - end)
233 (84 - 316)48 (257 - 304)
definitionCHROMAT_FILE: MSMg01no464_p09.b1 PHD_FILE: MSMg01no464_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005CHROMAT_FILE: MSMg01no464_p09.g1 PHD_FILE: MSMg01no464_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAATATATCCGC
GGNATTCCAGAGTTTGCTACTGACAGGGCAACCCATGGCAGATGATCCAA
GAGTGGAGGCTGCATATCTTCCTGCCTATGTCATCAACACTGTTTGCAGC
CATAGGGTTCATCAGGACCCAGGTCTGTTTGAGCACATTACTTGGCTGCC
TGCCGTCTTCTAGTTAGATCCTGATTGCCCCGTGCAGGACGCATCTCTCT
TGTTCCTCTTCTAGACTGGCAGTGTCCAGCCTGCTCTGGGCCTTTAGTGC
CATGACCCCTGTTGTTTCATAATTTGACCAGAAGAGCTAGCCCACTGATG
GAGTTGTAGCTGTGGACTCTGCTGTTGCTGCCGGGCCTCCTGTGTGGCAC
CCCCTCTACAAGGAAGGCTTAGTATCGTGAATCACAATAGGCACTCCACT
GTGGGAGATTTGTATTCCCTGCAACTAACACCAGCACTGTCTCCAGTCTC
CCACCAGCTCTCATCAACCTCCTCATTATCCATCTTACCACTTCCCTTCC
TCCCTCTAGTCCAATGACACTCTCAGATTGTTTCATAAAGGCAGTTTATA
ACATACTGATTTATTCCTTATGACTTATACATTAACTACTTTTTTCTTTC
CTCTATCTCCGCAGTGGCGGCTCCCCCTCCGTGGATCTTCACCATACAGC
GTACTTAGTATTTCTACACGAGTTCATATTCCCCCTCGTTCC
TTACGATGCCATGGTAAGANAGAAGAACGGCTGTTTCATACGTGGAGGTG
AACNANAGAATTATCTAAAAAATGGGGGGAAAGNNGGAAGAGCGCTTGGG
AGGGGCTCTAAGATTTCCTGTCGACAACGCTGTCATCAAACAGACATAAC
TTCTTTGTGTATTCACAGGAGAACTTTTGTCTCTTACTTCTACAGAATCG
CTTGTGCTACTACTTCGAAACCAAGCTGAAGAGAAGTGAGGAGAGTGTTT
TCTTGTCTTGCTCATTTCTTTCCAGAGGATGCTTCCAGCTTCTCTCTACA
CAGCTACTACTCTTTCTCGTTTAATGGCAGCCGCGCTGGCGCGGATATAT
TAATCTATTTTCCCATGCCAAGGATGAAGCCCGCTTCATGCTGGAGAATA
ACCCAGTTCATGTTTAGTGTCATGATCTACGTCCACTAGTATTCCGCGAA
CGGTATTGGCCGATCGTTGCTTTTCCCTTATGGAACACTCCTCTGATTTT
GTTATCATGGCACCGCTGATCGCATATATACTTTCTGCACTATTGTTTTT
TCTTCTTCCCTTCGCACTACCTCTCGTACGAATGATTCCTTCCTCTCCAC
TTTCGCCGCAATTCCCGACGCACCTTCACATGTCCCCCCTCTTTTTTCTT
AAACGCTTTATTTATATCCTGCTCACTCCTTCTGTTCCGCTTCTTTTCAT
TATTCCCTGATTCTCACCTTACCTTCGTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p09.b1 MSMg01no464_p09.b1 CHROMAT_FILE:
MSMg01no464_p09.b1 PHD_FILE: MSMg01no464_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:53 2005
         (233 letters)



>mm_chr6_143088172_143088804
          Length = 633

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggcagatgatccaagagtggaggctgcatatcttcctgcctatgtcatcaacactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggcagatgatccaagagtggaggctgcatatcttcctgcctatgtcatcaacactgt 260

                                                                       
Query: 61  ttgcagccatagggttcatcaggacccaggtctgtttgagcacattacttggctgcctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcagccatagggttcatcaggacccaggtctgtttgagcacattacttggctgcctgc 320

                                                                       
Query: 121 cgtcttctagttagatcctgattgccccgtgcaggacgcatctctcttgttcctcttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 cgtcttctagttagatcctgattgccccgtgcaggacgcatctctcttgctcctcttcta 380

                                                               
Query: 181 gactggcagtgtccagcctgctctgggcctttagtgccatgacccctgttgt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactggcagtgtccagcctgctctgggcctttagtgccatgacccctgttgt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)