BAC Information

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BAC

Clone NameMSMg01-466K02
Chromosome6 (Build37)
Map Location 96,498,313 - 96,701,155
singlet/doubletdoublet
Overlap geneC630007B19Rik
Upstream geneSuclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K02.T7 (MSMg01no466_k02.b1)MSMg01-466K02.TJ (MSMg01no466_k02.g1)
ACCAG550532AG550533
length778772
length of high quality
(start - end)
167 (49 - 215)368 (80 - 447)
definitionCHROMAT_FILE: MSMg01no466_k02.b1 PHD_FILE: MSMg01no466_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:11 2005CHROMAT_FILE: MSMg01no466_k02.g1 PHD_FILE: MSMg01no466_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,700,995 - 96,701,155)(96,498,313 - 96,498,680)
sequence
TTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTAAATGTTTCTTTGGTCATAAACTATGGAGAAGGAAGATC
CTCAAATATCTTGAGTAGGCTAGTGGTTTGAATCAGGGGGAATTTTACTC
CATGTTTCAGAGGACTCTGGCAATTTTTAGAGACATATTTGGGTAGAGAA
ACTTGGTTCGGGGCAGGGAGATGTTGCATCCAGGGAGCTGAGGGCAGGGA
CTCTGCTAAATATCCCCCAATCCTACAATGCTCAGAACAACCTCTGTTGA
AAGAATGACCTCACCAAATGTCAACAGTGGTGCAGTTGAGAGAACTTCAA
CAAAGCCAGTTCGGGTTCTGCGTCCTTTGTTTGGACAAGTCTGCTGTCTT
GCTCCAACAAGAAGCTAGGCTAAGATTTACTGAGGAGACCTTTTAGTAAT
ACTGCATAGAACGCGTTGCTTAGGAACCGTCATCTTGACGTCCAGTCTCA
ACTGTGCTCTTAGACTATCTCTTATTCTTGTTACGCTACCTCCGTCTAGT
GTTGTAAGGTGCTTGTCTCCCATATGCCCCTGGTTTGAAACATGCCCTTT
TTCTGTATATTTTTGTATTTTTATTTCCTACGCCTCTTTTCCTTTTATTT
TTTTTCTTCGGCGCATCTTCATTTTCCTCATCTCTTCCTATTCGTTTCCC
CCCTCACCTCTACATTTTCCCCCCTGTATTTCCTCTTCTCAGCTACTTCA
ACCCCCCTCCTTCTCCTCTTTTCTTTTC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGTGTAGGTAGTGTAAAA
GACAAATAAGTGAATTTCTAAGAAGCATCAAGTATGGATAATATAAGGTC
CACTATTTGGAAATTCATATTCTCTTGCTGATATTAATTACTTTCAGTGG
AGCTATAGGACAATGCTGGATAATAATAGTGATTTTGTAACCCTTCCTAC
ATTCCAGGAACAATGCTAAGCCCCATATGTTTTAAGTGCATTAAAGCAAC
AGTCTGAGTGTGTCAGACCAGTCTGCTCAGTCCTCTCTGCATCTGTCCCA
AACCCTAAGCTTAGTGTCAGTTGCATATTCTGTGTGCCAGTCCAATCTGG
CCAGTTTGCACTACCTCAGTCCACTTATACCACATCCAACTGCCAGCCCT
TGTATGGGGGCATTCATCCTGTGCCCAGATCGAATTTGAAAAGTATAACT
CTCACTCTTGATCTTAGAATTCTCTTTTTGTAGTAGACATTGTCCATTTC
CAGTAACCCCAGTTTCTACTAACTACTTACCATGCGGCCTCCCAGCTCCC
CATAGATATATTTTACAGTTTTAAGTCCCCATTTTCCTGTCCCTATTTCT
CTGCCCTCCTTTCCCGTATGACTCGCTACCTAATGAACCGGGTTCGTTCT
CTTTCCTCTCTTCCTCTTCATAATTTTTTATCTTTCCTCTCCTTCTTCAT
TCTCTCCTGCTCTTTGTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k02.b1 MSMg01no466_k02.b1 CHROMAT_FILE:
MSMg01no466_k02.b1 PHD_FILE: MSMg01no466_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:11 2005
         (167 letters)



>mm_chr6_96700789_96701355
          Length = 567

 Score =  257 bits (133), Expect = 2e-73
 Identities = 154/161 (95%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctaaatgtttctttggtcataaactatggagaaggaagatcctcaaatatcttga 66
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaattctaaatgactatttggtcataaactatggagaaggaagatcctcaaatatcttga 308

                                                                       
Query: 67  gtaggctagtggtttgaatcagggggaattttactccatgtttcagaggactctggcaat 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 307 gtaggctagtggtttgaatcagggggaattttactccatgtttcagaggactgtggcaat 248

                                                    
Query: 127 ttttagagacatatttgggtagagaaacttggttcggggca 167
           |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 247 ttttagcgacatatttggttatagaaacttggttcggggca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no466_k02.g1 MSMg01no466_k02.g1 CHROMAT_FILE:
MSMg01no466_k02.g1 PHD_FILE: MSMg01no466_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:11 2005
         (368 letters)



>mm_chr6_96498113_96498880
          Length = 768

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/368 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgtgtaggtagtgtaaaagacaaataagtgaatttctaagaagcatcaagtatggat 60
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agatgtctaggtagtgtaaaagacaaatacgtgaatttctaagaagcatcaagtatggat 260

                                                                       
Query: 61  aatataaggtccactatttggaaattcatattctcttgctgatattaattactttcagtg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 261 aatataaggtccactatttggaaattcagattctcttgctgatattaattactttgagtg 320

                                                                       
Query: 121 gagctataggacaatgctggataataatagtgattttgtaacccttcctacattccagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctataggacaatgctggataataatagtgattttgtaacccttcctacattccagga 380

                                                                       
Query: 181 acaatgctaagccccatatgttttaagtgcattaaagcaacagtctgagtgtgtcagacc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 acaatgctaagccccatatgttttaactgcattaaagcaacagtctgagtgtgtcagacc 440

                                                                       
Query: 241 agtctgctcagtcctctctgcatctgtcccaaaccctaagcttagtgtcagttgcatatt 300
           |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 441 agtctggtcagtcctctctgcatctgtcccaaaccataagcttagagtcagttgcatatt 500

                                                                       
Query: 301 ctgtgtgccagtccaatctggccagtttgcactacctcagtccacttataccacatccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgtgccagtccaatctggccagtttgcactacctcagtccacttataccacatccaa 560

                   
Query: 361 ctgccagc 368
           ||||||||
Sbjct: 561 ctgccagc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)