BAC Information

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BAC

Clone NameMSMg01-466K18
Chromosome6 (Build37)
Map Location 4,383,349 - 4,383,746
singlet/doubletsinglet
Overlap genenone
Upstream geneAI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K18.T7 (MSMg01no466_k18.b1)MSMg01-466K18.TJ (MSMg01no466_k18.g1)
ACCAG550564AG550565
length770757
length of high quality
(start - end)
288 (127 - 414)400 (82 - 481)
definitionCHROMAT_FILE: MSMg01no466_k18.b1 PHD_FILE: MSMg01no466_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:14 2005CHROMAT_FILE: MSMg01no466_k18.g1 PHD_FILE: MSMg01no466_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCCTAATAATTGCGGCCGCCAAAAGAGCACGAAATCAAGAGAAGG
CGCGGAANCANNGNCTACCANAAATGAGGAGNACTCCATTGGGGAAATGT
ACCACATTTTCTGTATCCATTCTTCTGTTGAGGGGCATCTGGGTTCTTTC
CACCTTCTGGCTATTACAAATAAGTCTGCTATGAACATAGTTGAGCATGT
GTCCTTCTTACCAGTTGGAACATCTTCTGGATATATGCCGAGGAGAAGTA
TTGAGGGATCCTCCAGTAGTATTATGGCCAATTTTCTGAGAAACCGCCAA
ACTGATTTCCAGAGTGTTTTTTTTAGCTTACAATTCCACCAACAATGGAG
GAGTGTTCCTCTTTCTCCACATCCTCGCCAGTATCTGCTGTCACCTGAGT
TTTTGATGTTAGCCATTCTGGCTGGTGTGAGGCGGAATCTCTCGGCTGTT
TTGACTTGCATTTCCCTGATGACTAAGGATGCTGAACATGTTTTCCTGTG
CTCCTCATCCTTTCTGTACTCCTCTGGTGATATTTCTCTGTTTTTTTCAA
ACGCCCTTCTTTTTAACGCGTTCTATTTGAATTTCTCGCTATCCATCCTC
TTTTAATTCGTTTACTTCCTCGCGCTTGTCAGCCCTTTTATTTTTTTCTT
TCTTTTTTGCCTCTTTTCTTTTCTCTTCTTTTTCTTTCCCCCCTCTCCCC
TCCCATTCCCTTCTATATCATCCCTATTTCTCATTATACTCTTACCGTTC
TTATCATTTCTTTCTTTTTN
NTACCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCTTAGTGCAGCCAAG
AGTAGCAATGCTTCTTTAGCCAGTCCCACACTCTTTTCAAGTTATTCATA
CAAGGTCCAGGATGACATAGGAAACAAAGCAGATGTGATGACTGGAATCT
GAAAAAGTCAGTAAAGAAGGGTAAAGAAGTATGAATGTGTGGTCAGTGAT
TAATAATAATAATAAGCCAGGTATAGGTGCTGGAGGAGCCTTGAATGGGG
GACTTCACTCCTGGCCAGAAGGATCAGGCCAAGGTTGATAGTGGAAATGA
ATTATCCATTGAGTATGAATCAAAACCAGGAGTTTTCGAGTGACGTCAGC
ATTAGGATGAGGGAAGGTGATAGGTGAAGCGACCATGTAAGTAGGCACAG
CCATGCAAAGCTGTAATCTCAGAGCTCTGTTAGTGGATGAGGTTCAGGAT
GATGTCATTGATCTTACTCTTTGGTCCTGTTTTATATGCCTCGTTTTCCA
TTCTTGCTCTTTATTTCCTTGATTCTTCTCCTGCTTTTGTTTTTTTTTCT
TTTTTAATGGTTTGCACTAATTTTACTCTTTATACTCTCCCTTTTATGTT
TCCCTTACCCTATTTTTTTTATCCCCACCTTTCTCCTCTCTCCCTACGCG
CACCTCCTATCATCCTCTCTTCCCTTTTTCTTCTTTTTCCTCCTTCTAAC
TCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k18.g1 MSMg01no466_k18.g1 CHROMAT_FILE:
MSMg01no466_k18.g1 PHD_FILE: MSMg01no466_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:14 2005
         (400 letters)



>mm_chr6_4383149_4383948
          Length = 800

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcttagtgcagccaagagtagcaatgcttctttagccagtcccacactcttttcaag 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agtgcttaatgcagccaagagtagcaatgcttctttagccagtcccacactcttttcaag 539

                                                                       
Query: 61  ttattcatacaaggtccaggatgacataggaaacaaagcagatgtgatgactggaatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttattcatacaaggtccaggatgacataggaaacaaagcagatgtgatgactggaatctg 479

                                                                       
Query: 121 aaaaagtcagtaaagaagggtaaagaagtatgaatgtgtggtcagtgattaataataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaaagtcagtaaagaagggtaaagaagtatgaatgtgtggtcagtgattaataataata 419

                                                                       
Query: 181 ataagccaggtataggtgctggaggagccttgaatgggggacttcactcctggccagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ataagccaggtataggtgctggaggagccttgaatgggggacttcactcctggccagaag 359

                                                                       
Query: 241 gatcaggccaaggttgatagtggaaatgaattatccattgagtatgaatcaaaaccagga 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 358 gatcaggccaaggttgatagtggaaatgagttatccattgagtatgaatcaaaaccagga 299

                                                                       
Query: 301 gttttcgagtgacgtcagcattaggatgagggaaggtgataggtgaagcgaccatgtaag 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 298 gttttcgagtgacgtcagcattaggatgagggaaggtgataggcgaagcgaccatgtaag 239

                                                 
Query: 361 taggcacagccatgcaaagctgtaatctcagagctctg 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 taggcacagccatgcaaagctgtaatctcagagctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)