BAC Information

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BAC

Clone NameMSMg01-467I10
Chromosome6 (Build37)
Map Location 45,661,259 - 45,661,472
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467I10.T7 (MSMg01no467_i10.b1)MSMg01-467I10.TJ (MSMg01no467_i10.g1)
ACCAG551214AG551215
length727731
length of high quality
(start - end)
239 (74 - 312)214 (317 - 530)
definitionCHROMAT_FILE: MSMg01no467_i10.b1 PHD_FILE: MSMg01no467_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:25 2005CHROMAT_FILE: MSMg01no467_i10.g1 PHD_FILE: MSMg01no467_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGAACCATCCGCGGA
ATCTTTGTTCTGCCATGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTC
TGAAGTCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTT
TGTCTTATTGACGGTGTCTTTGATAATTGCAAATTTTGACGCTTATCTTT
TAGCATTAATTTGTTAGGACAAACTAAAATTGTATTTTATATGTGGCTGA
CACACATATATGTTGATAGTATACTCATACACAAATATGTTTTTGTTCTC
TTAATATTATACTAAGCAGATTTTCATTTAGGGAGATTTTATAGCTTGAT
ATCTGGAATAACTTTAGGAGTTAATAAAAATTGAAACTATAACTGAAATT
CAGTTTACAAAAACTTTTAAGAAGAGTTGTTACATGGTCATCATTGCTTG
AAGTTGTATGTATCCTGCCCCGTGTGTGATACCCAGCTTTTTCCCTGGAG
ACTTAGTTATGTCTTGTTCCGGATCTCACAACATTTATGTCATTTCTTGC
TGGTTGTTTGAACCATGAAACAAAACTGTTTGGTCTTGTTTTTTTTTTTC
TCTTTTCCCCATTGTCTTATCTCTCCATTTGTTTCTTTTTATATTTTCTT
ACTTCCCCTTCTTACTTTATTATTTAT
ATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCAGAAATTCACTTGCTTAATTTCTGGAAGCCCTGTAGCAG
ACAGTATTTGGGGGTAATTGTTCTTCAGGAACTTCTTGAAGAGAGCATAC
AGAAAACATTTTCCAAGTTTATGTCCTTTCCTTGGACACTTGGAATGATG
TGGTAGCTTTTCCTGTTTTCCTGAGACCATCAAGGTCTAGGGTATGCTCT
GACTCATTGAAGCTTTAATTTGATGTTGAAGTCTCAAAGATCTTTGAAGG
ATTGGTAAATATCTTTATTTATTTTTTATTTATTTGGTTTGTTCTATATA
ATTACTTTATTTAATATATGTTATATACTTATGATTTATTACATATTACA
TATGATACATTATACATTGCATATTACATAATGTTGTTTTACTAAGTTTG
TACTGAGTACATCATCATTCCCTTTCCATGAATTTCTTCCCTTTCTACTT
AACGACTTCCCCTCTTATGCTCTCTTTTGTATTTCTTCTCAATTTAATAC
CCAGAGTCCATTTATTACTGCCTGTATCATATCCTCTGTAAATGAGCCTG
TGTACACCATACTTGCGCAATGACTACCGCCCTAGTCCCTATTCCTTCTC
CTATTGGGCCCAAAAAGAGTGATTCTTGTATTTCCTCATCTTCGCCCAAA
GAAAAATGGACCTGGCCTCTTGTTATGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_i10.g1 MSMg01no467_i10.g1 CHROMAT_FILE:
MSMg01no467_i10.g1 PHD_FILE: MSMg01no467_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:26 2005
         (214 letters)



>mm_chr6_45660985_45661598
          Length = 614

 Score =  406 bits (210), Expect = e-118
 Identities = 213/214 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttattttttatttatttggtttgttctatataattactttatttaatatatgttatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atttattttttatttatttggtttgttctatataattactttatttaatatatgttatat 429

                                                                       
Query: 61  acttatgatttattacatattacatatgatacattatacattgcatattacataatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acttatgatttattacatattacatatgatacattatacattgcatattacataatgttg 369

                                                                       
Query: 121 ttttactaagtttgtactgagtacatcatcattccctttccatgaatttcttccctttct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 368 ttttactaagtttgtactgagtacatcatcattccctttccatgaatttcttccctatct 309

                                             
Query: 181 acttaacgacttcccctcttatgctctcttttgt 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 308 acttaacgacttcccctcttatgctctcttttgt 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)