BAC Information

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BAC

Clone NameMSMg01-468H05
Chromosome6 (Build37)
Map Location 107,212,745 - 107,213,167
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468H05.T7 (MSMg01no468_h05.b1)MSMg01-468H05.TJ (MSMg01no468_h05.g1)
ACCAG551919AG551920
length803927
length of high quality
(start - end)
426 (45 - 470)180 (73 - 252)
definitionCHROMAT_FILE: MSMg01no468_h05.b1 PHD_FILE: MSMg01no468_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:40 2005CHROMAT_FILE: MSMg01no468_h05.g1 PHD_FILE: MSMg01no468_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTTGTGTTTTCAAAGAAAATTTACCTCTATAGGTTCAGATGGCC
CTTCTGGAGTGTTCGTCACAATTATATACTGCTGAATGAAGAAGTAACTG
AATAGTCTTCAATTATGTGGTGTGTCTAGGAAATAGTTAATTCCATTTAA
CTATTTTCTGGATAGATAATCCAGTACATAAAATTACTTACTTTTCCAAG
TTCATTGCTCATTCTTAGAATGAAAAACGTCTCTGGAGTGTTTACCAACC
AGGTTGGGAGCTCTCTCATCCCTATGCTGTAAAACCCATACAACTTGGCC
AGTTACCAATCCACAGTTGAAAAGGGATGGCATCTATCACAGGGCCAACA
TATTTGAGAGACTTCTTATAAAACTGCAGTGGTATGGTTGCTGCCAACTG
TTTCAATCATGCTGAAGAAATCCGAGGTAAAATCTAAAATCTATCTTTCA
AACATCGTATGACAAAGATAGATATCCATCAATGCCATGGATTATATCTT
ACAATGCAATGTATCTTATTATGGATTCCTCTATACCCTATTATTGCTTA
ACTCTTCCTCTTAAGTTCAATAAAGATTAATTAAGGAATCTCTATATTGC
TTACTAAGTCATTTTGAAATTAAAATGCGTCCCTCTCAAATTACCGGTTA
CATTCTTATTTTAATTGGTTTAAATAAAAAAAAAAAAAGTCACCCATTGG
GGTTTACTTCAATAAATCTCTTGCTATACGATTTCCTTCTTGGCTCTTGT
AAN
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATG
AGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCC
TGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCT
GGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCT
CTGGAGTTACGTGTTATAGCTGTCTTTGTTAAAAGATTGTTCCTCTGTTG
ATTTTGTTATCCTCTATCATTTTTTTTTTTTATACATTCCTCTTCTCTGA
GATTCTGTGTCCTTAGCCAGTCCCTGTAGGCAAGCTCCTCCTTCCTTCCT
TACGTCTGACTTGTTCTCCCCCCGCTCCATTCTCTCTCCCTGGTTTAACT
TCTGTTTTTTCTCTTTATTTTTTCTTTTTTCCCTTCATCTCGCTCTTCTC
TTTCTTCCTTATTTTATCTTTTTTTATCCTCTCTCTTTTCTTTTCCCTTC
TTTTCCTTCTCTTCTTTCATTCTCCTTCCCGTGTTTTTCCTATCTTTTCA
TCATCTCTCCTCTTTTTTCATTCCTCTTTTTCCTTTTTCTTTTACCGCTT
ATCCTCATCTTTTATTTTTTCTGTCATTTTCTTTAATTTCATTTTTCTCT
CTCTTACTTTCTTTTGTCCTTCCTCTCTTTCTTTATTATCACTCTTTATA
TTCCGTCTATCATTACTCTATCTTTATTTTCTATTTCCTTAACATCTATA
TCTTCTCCCTCTCTCTGTTGTGTTCTGCTTCTCTTATCATCTTCTTCCCC
TCCCTCTTTCTCTCTTCCTCTTCTATGTATCTATTCTGTTCATCTCTATA
TTTACCTATTCCATGATCTCTTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_h05.b1 MSMg01no468_h05.b1 CHROMAT_FILE:
MSMg01no468_h05.b1 PHD_FILE: MSMg01no468_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:40 2005
         (426 letters)



>mm_chr6_107212542_107213367
          Length = 826

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccttgtgttttcaaagaaaatttacctctataggttcagatggcccttctgg 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccttgtgggctcaaagaaaatttacctctataggttcagatggcccttctgg 263

                                                                       
Query: 64  agtgttcgtcacaattatatactgctgaatgaagaagtaactgaatagtcttcaattatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgttcgtcacaattatatactgctgaatgaagaagtaactgaatagtcttcaattatg 323

                                                                       
Query: 124 tggtgtgtctaggaaatagttaattccatttaactattttctggatagataatccagtac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggtgtgtctaggaaatagttaattccatttaactattttctggatagataatccagtac 383

                                                                       
Query: 184 ataaaattacttacttttccaagttcattgctcattcttagaatgaaaaacgtctctgga 243
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 ataaaattacttacttttccaagttcattgctcattcttagaatgaaaaatgtctctgga 443

                                                                       
Query: 244 gtgtttaccaaccaggttgggagctctctcatccctatgctgtaaaacccatacaacttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgtttaccaaccaggttgggagctctctcatccctatgctgtaaaacccatacaacttg 503

                                                                       
Query: 304 gccagttaccaatccacagttgaaaagggatggcatctatcacagggccaacatatttga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccagttaccaatccacagttgaaaagggatggcatctatcacagggccaacatatttga 563

                                                                       
Query: 364 gagacttcttataaaactgcagtggtatggttgctgccaactgtttcaatcatgctgaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagacttcttataaaactgcagtggtatggttgctgccaactgtttcaatcatgctgaag 623

              
Query: 424 aaa 426
           |||
Sbjct: 624 aaa 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)