BAC Information

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BAC

Clone NameMSMg01-468K07
Chromosome6 (Build37)
Map Location 63,122,964 - 63,123,321
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik, GA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneGrid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468K07.T7 (MSMg01no468_k07.b1)MSMg01-468K07.TJ (MSMg01no468_k07.g1)
ACCAG552067AG552068
length851810
length of high quality
(start - end)
---417 (76 - 492)
definitionCHROMAT_FILE: MSMg01no468_k07.b1 PHD_FILE: MSMg01no468_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:56 2005CHROMAT_FILE: MSMg01no468_k07.g1 PHD_FILE: MSMg01no468_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGGAGC
GCGCGNGAATTCCTGGGAATGGTTACAATAACAACGCGTAAGAAGATGGA
ATATATATATATATATATATATATATATATATATACCCATATATATATAC
GCCCACACCGCGCGCGGGGGGAGCGTCAGGCGGGGGGGGGTGCGAGCGCG
CGTGCGAGCGCGCGGGAGAGGCGCGCGCGCGCGCGAAGCCGCGAGCGCGC
GCGCCCGCCCGCCCCCCCCCCCGGGCCGCCCCGCGCGGGTCCCGGTCGTG
CCGTGCCCGCCGCCCCGCTGCCCGTGGGTTGTTTTTTTTTGTCGCGGCGC
CTGCCGCGCCGCCAACGACGCGCTTCGGGGTCCCCCCCCCCCCCGGCCCC
GCGGCGCCCCCGCCCCCCCCGCCCCCCCCCCCCCTTGCACTTTCCGCGTC
TCCTTTGCCTCTCTCCTTCCCTCCCCTTCCTTCCCCGGCCCCCCCCCCCC
CTCCCTCGGCCCCATTACCCCCTGCGCCCCCCCCGCTGCTCCCTCCCCGC
CCCCCTCCCCCCCGCCGCTCTCCCCCTTTGTACCAGCTACTTCATTACCC
CTCCCCCATTCCCCTACCCCCCGCCTCCCCCCCCCCCCTCTCACCTTCTC
TTACCCCCGCTTTCCTCCTCCGCCCCCGCCTTNCCTTTGCCCCCCGCCCC
GCCCCCGCCGCCCCCCCCCTGCCCCCCCCCACCCCCTCCCCTCCCTCTCC
TTTTCCCTTCCGTTGCCGGCCCGCCCACCCCCCCCTCGTCCCTCCCTCGT
CGCTTCCCCCCCGTTCTCCCCCTTGTCCTCTCCTTCTCCCTCCCCCGCCC
C
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAGTGGAAATACTAACAGAAAATG
ACTGTTTAAGATTGGGATAATCTTGTTTCACACTGAGCGTCTTCATCAGG
TATGTTAGCTCTCACCTGGACTTCCTGCAATCAGGAGGCCAAGTCAGGAG
GCTTGCCATGAGTAAGAAGCAACACTTATTTTCATACTGATTTCCAGAGC
AGTGTTGGATACAGAGTGTGACCTTGTCTCAAGATATAATAATAATAATA
ATAATAATAATAATAATAAATGTACTGCTTTTTTTTACACTAACAATAAA
AACCTCTGAAGAACAGCTGTATTTTAGAGGTCTCTCAGCCTGTGTTGCTG
AAAGACACTTTTTAAATCTCATTCCCATGGTTAAAATTCTTTCATTCCTG
TTCTGGCTTTTCCATTGTCTTTCTGTTTCATTGATATTTACAAATAGGTA
CCACCCATTGGCGATTGGAATACATTGATCAACACATGTATAGATCCTTT
TGTTCTTCACCAATTATGTTCTCCAATCCCCATCTTTTCCCTTCAATTGT
TTTCTTTGTTTCTTTTAATTTTGTTCTCTATTTTTTATTATCGTTTCATA
ACCTTATCACTTCATTCGTTCATTCTTTATTTATCCCTTATTTTTTCTAC
CTTACCCTATAACTTTTTTCTCTCCATCTTTTTTCTATCTTACTTCCTTA
TTTATATTTTTTCCTCTTTTTTTTCTTCTTTGCTCATCACTCTTTATATT
CTTTTCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_k07.g1 MSMg01no468_k07.g1 CHROMAT_FILE:
MSMg01no468_k07.g1 PHD_FILE: MSMg01no468_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:56 2005
         (417 letters)



>mm_chr6_63122505_63123321
          Length = 817

 Score =  615 bits (318), Expect = e-180
 Identities = 344/358 (96%), Gaps = 9/358 (2%)
 Strand = Plus / Minus

                                                                       
Query: 69  catcaggtatgttagctctcacctggacttcctgcaatcaggaggccaagtcaggaggct 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 catcaggtatgttagctctcacctggacttcctgcaatcaggaggccaagtcaggaggct 758

                                                                       
Query: 129 tgccatgagtaagaagcaacacttattttcatactgatttccagagcagtgttggataca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgccatgagtaagaagcaacacttattttcatactgatttccagagcagtgttggataca 698

                                                                       
Query: 189 gagtgtgaccttgtctcaagat---------ataataataataataataataataataat 239
           ||||||||||||||||||||||         |||||||||||||||||||||||||||||
Sbjct: 697 gagtgtgaccttgtctcaagatataataataataataataataataataataataataat 638

                                                                       
Query: 240 aataaatgtactgcttttttttacactaacaataaaaacctctgaagaacagctgtattt 299
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aataaatgtactgctcatagttacactaacaataaaaacctctgaagaacagctgtattt 578

                                                                       
Query: 300 tagaggtctctcagcctgtgttgctgaaagacactttttaaatctcattcccatggttaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tagaggtctctcagcctgtgttgctgaaagacactttttaaatctcattcccatggttaa 518

                                                                     
Query: 360 aattctttcattcctgttctggcttttccattgtctttctgtttcattgatatttaca 417
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 517 aattctttcattcctgttctggcttttccattgtctttctgtttcactgatatttaca 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)