BAC Information

Click to search

BAC

Clone NameMSMg01-468M24
Chromosome6 (Build37)
Map Location 10,693,848 - 10,693,949
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468M24.T7 (MSMg01no468_m24.b1)MSMg01-468M24.TJ (MSMg01no468_m24.g1)
ACCAG552196AG552197
length805825
length of high quality
(start - end)
369 (77 - 445)104 (83 - 186)
definitionCHROMAT_FILE: MSMg01no468_m24.b1 PHD_FILE: MSMg01no468_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:10 2005CHROMAT_FILE: MSMg01no468_m24.g1 PHD_FILE: MSMg01no468_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAT
CCGCGGAATTCAAGGCCCATTCCTAAACATAATAAAAGCAATATACAGCA
AACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGTAATACCA
CTAAAATCAGGGACTAGACAAGGCTGACCACTTTCTCCCTACCTATTCAA
CATTGTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCA
AGGGGATACGAATTGGAAAAGATGAAGTCAAAATATCACTTTTTGCAGAT
GATATGATAGTATATATAAGTGACCCTAAAAATTCCATCAGAGAACTCCT
AAACCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAAGTAACCCAA
ACAAGTCAATGTTCTTTCTCTACACAAAGAATAAACAGGCTGGGAAAGAA
ATTAGGGAAACAAAACCCTTCTCAATAGTCACAAAATAAATAAAAATATC
TTAGCATGACTCAACTAAGGAAGGGGAAGGTCTGGATAATAAGAACTTCC
ATTCCCTGGAGAAAGAATTTAAAGAGAACTTCCAAAGAGGGAAGGATTCC
CCTGCTCCTGGGTGGGGGGGGGCAAATTGGTTAACCCTTTTGACCCCCTC
TAATTTCCGCGGGCCTGGGTTGTGTTCTTGTTTATAGACCGGCCCCACGG
GAGAAGGGGTTCTTTATCCCTCCCCCTCAATATTTTTGCTCTCTGCGTTC
CTTTCCCGCTTCTCTTCCATCATCCCTTTCGTCTTGTCTCACCTCTCTCT
GCTTG
NNNCCCGATGATAAGGNNTANCCCTGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTAAATCAGAGGT
AGGAACTTTGGATTATAAATATTTGCTTTCATAATATAACTTGTTTGTGT
AATATTTTAGACTTTTTAATTTCAAATACATTTTANACTAATTAAACTGT
GACTAGATGCTTTGATTTGCTTTACTTGNCAATTTGCTTGGATTTATATT
TATAATACAATCCTATANTTAAAATGCCCCCTTTCCAAAAAAAACAAAAC
TTTCTGCTCCTTTTAAGGNNNNNTTTTTTTTTTTGAAATTTTTACCCCTC
CTTTTNNNNNNNCTAATCCCCATTCTTNTGTTTTTATTTTTTCTTACTTT
NNGGGTGGGGGGGGGGGGGTGCGGGTGGGGGTGTGGGGTGAGAGGGAAGG
GGGTGAGGAGTGAGGGGAGGGGGGGGGGTGGGGGGAGGAGGAGCGGTGGC
AGGGGTGGGAAGCGGGGGAGCGCGTGGGAGTGGGGGGGGTGAGGGGGGGT
GGGCTGAGGGGGGGGGGAAGGAGGTGGGAGGGGGTGGGGGGAGTGGGGAG
GAGCGGGTGCGAGAGAGTGGAGAGGGGGGGGTGGGANNNNNNNNNNNNNN
NNNNNNNNNNNNAAACAANANNNNTCTTTANNNNNNNNNNNNNNNNNCNN
NCNNCNCCNNNNNCNNCCNNCNCCCNCCCCNNNNNNNNNNNNNNNCNNCC
CNNCCCCNNNCCCNNNCNNNNNNNCNCNNCCCCCCNNNCCNNNNNNNNNC
NCCCCCCCCCCCAACCACCGACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_m24.g1 MSMg01no468_m24.g1 CHROMAT_FILE:
MSMg01no468_m24.g1 PHD_FILE: MSMg01no468_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:10 2005
         (104 letters)



>mm_chr6_10693647_10694150
          Length = 504

 Score =  182 bits (94), Expect = 6e-51
 Identities = 100/102 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctttttaaatcagaggtaggaactttggattataaatatttgctttcataatataacttg 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 ctttttaaatcagaggtaggaactttggattataaatatttgctttcataatataactcg 244

                                                     
Query: 62  tttgtgtaatattttagactttttaatttcaaatacatttta 103
           ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 243 tttgtgtaatattttagacttttaaatttcaaatacatttta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)