BAC Information

Click to search

BAC

Clone NameMSMg01-468N22
Chromosome6 (Build37)
Map Location 90,154,039 - 90,154,514
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8
Downstream geneV1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468N22.T7 (MSMg01no468_n22.b1)MSMg01-468N22.TJ (MSMg01no468_n22.g1)
ACCAG552240AG552241
length781772
length of high quality
(start - end)		479 (77 - 555)458 (68 - 525)
definitionCHROMAT_FILE: MSMg01no468_n22.b1 PHD_FILE: MSMg01no468_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:15 2005CHROMAT_FILE: MSMg01no468_n22.g1 PHD_FILE: MSMg01no468_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAATTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAACTCCTTTACAAAAATTTGCACAGTGTCAATTTCTTG
AACACCTAGAACACAGTGCTGGGTTTCATTCATGTTGGTTCCTGTGAGTT
CTACCTTCTATTGTAGATTCATATAATATCTGCTCCTATGTGATAGTAAT
TGCACCTTATAGAGAAGATTCAGAGCTCATTAGTATTAGTTCATGTTCCA
GAGTCTCCAAGATTCTGAGTATTGAATAAAATTGATATGTGTATGGGCAC
ACATGTGTGTGTTTTAGTATCCTGTCATTATATATTCTAAGTGATTACCT
AATTTTAACTAATACATAAAGGGACAGTTAAGATAATGTCTTTAACAAGC
ACCGATTTAACATTTTTTTTTGGTTGTTTCTCTGTATAACCTTGGTTGTC
CTAGAGCTCACATTGTAAACCAGGCTGGCCTCGAACTCAGAAATCTGCCT
GTCTCTGCCTCCCAAGTGCTGGGATAAAAGGCATGTGCCACCACCGCCCA
GCTACCAGCACAGATTTAGAGAAGTGTAAGTCATTCCGGCTGTGACAAGG
CAGATCACATTTCAGATTTTCTTGGAAGAGAGTTTAAGGGAAAAATTATT
CATCATTCCCAGGGTGTGGGTTGATTTCTTTTTTAAAAAAAAACCCCCCC
CTTCTTCCGTTATTAAAAAGTGTCTGGCGTCAAAAAAAAAAACAAAATTC
CCCTTTTTCTCTTAACTTAAACACGGGACAT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAAATTCTGTGCAAAAACCTCTGGCCTTGGG
ATTTTAATGACTGCTTATATTTCCTTAGTGGTTATAGGTCTTGATTTAAC
TTTGGTAAGTGGCATCTATCAAGAAATATGTCCATTTCTTTTAGATTTTT
AAATTTGGTGAGTACAGGTTTTTGAAATATGACTAAATGATTCTTTGGAT
TCCTTTGTTTTGTGTTATTATGCCCCCTTTCACTCTGATTTATTAATTTG
GATATTCTATTTCTGCCTTTTAGTTTTTTTGGATAAGGGTTTGTCTACCT
TGTTGATTTTCTCCAAGAAAAAATTTTCATTTCATTGACTCTTTTGTATC
CTTCTTTTGGTTTCTATATTACTGATTGCAGCAGAGGACAGCAGGGTCCA
GGATAAGGCTGTACTGTGGTGACTCTTTTTTTTCCAGTAACAAAGGACTG
TGGGCTTCTTCCTCCCTGGATGAACTCCACTTGATTACATGTGTACAAGT
ATTGATATTCCAGAGGTTGTAATTCCCAAACGATGATTGGTCCAGCTTTG
AGAACCCTGCCCTGTGAAGGAAGCCCTGTGTGACACTACTAAAGGGGGTG
GGTGGGACTTGTGAACAGATTCTTAAAAACCACCCCTGAAGAAATTTTCC
CCCCACCCTGGGGAAATAGTGTACGGGACCTTTATTTCATGATATTTCAA
TTCTATTTCTCTATCTCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_n22.b1 MSMg01no468_n22.b1 CHROMAT_FILE:
MSMg01no468_n22.b1 PHD_FILE: MSMg01no468_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:15 2005
         (479 letters)



>mm_chr6_90153973_90154850
          Length = 878

 Score =  884 bits (457), Expect = 0.0
 Identities = 473/479 (98%), Gaps = 3/479 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttgcacagtgtcaatttcttgaacacctagaacacagtgctgggtttcattcatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aatttgcacagtgtcaatttcttgaacacctagaacacagtgctgggtttcattcatgtt 483

                                                                       
Query: 61  ggttcctgtgagttctaccttctattgtagattcatataatatctgctcctatgtgatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggttcctgtgagttctaccttctattgtagattcatataatatctgctcctatgtgatag 423

                                                                       
Query: 121 taattgcaccttatagagaagattcagagctcattagtattagttcatgttccagagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taattgcaccttatagagaagattcagagctcattagtattagttcatgttccagagtct 363

                                                                       
Query: 181 ccaagattctgagtattgaataaaattgatatgtgtatgggcacacatgtgtgtgtttta 240
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 362 ccaagattctgagtattgaataaaattgatatttgtatgggcacacatgtatgtgtttta 303

                                                                       
Query: 241 gtatcctgtcattatatattctaagtgattacctaattttaactaatacataaagggaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtatcctgtcattatatattctaagtgattacctaattttaactaatacataaagggaca 243

                                                                       
Query: 301 gttaagataatgtctttaacaagcaccgatttaacatttttttttggttgtttctctgta 360
           |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||
Sbjct: 242 gttaagataatgtctttaac-agcaccgatttaaca--tttttttggttgtttctctgta 186

                                                                       
Query: 361 taaccttggttgtcctagagctcacattgtaaaccaggctggcctcgaactcagaaatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 taaccttggttgtcctagagctcacattgtaaaccaggctggcctcgaactcagaaatct 126

                                                                      
Query: 421 gcctgtctctgcctcccaagtgctgggataaaaggcatgtgccaccaccgcccagctac 479
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gcttgtctctgcctcccaagtgctgggataaaaggcatgtgccaccaccgcccagctac 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space:   407092
Effective search space used:   407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |