BAC Information

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BAC

Clone NameMSMg01-469C24
Chromosome6 (Build37)
Map Location 4,461,659 - 4,462,142
singlet/doubletsinglet
Overlap geneCol1a2
Upstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
Downstream geneCasd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469C24.T7 (MSMg01no469_c24.b1)MSMg01-469C24.TJ (MSMg01no469_c24.g1)
ACCAG552482AG552483
length725805
length of high quality
(start - end)		---446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no469_c24.b1 PHD_FILE: MSMg01no469_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:41 2005CHROMAT_FILE: MSMg01no469_c24.g1 PHD_FILE: MSMg01no469_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTGATCGAAGANANTNNTTNTTCNAGATCCGGAATCAGCTCTTTCTCCT
CTCTCTGATTGATACAGTGCTACCAAGCAAGCAATAACTGCCCTCTTCTT
CTGAATGNAGTTCTCAGGGCTGTCAAGAGAGTGTGTGAGCACACAAGGGG
GACTAAAANCTATCTCTCTCTCATTTNAANCTGTCACTGTTAATATTGAT
GAANTATGGNGTCTCTCTACNGAAATTGAAAGGGNAACCTTTTGAAACCC
TGAAAAGTTTTTTTAACCAATGGNACCCGGAAACAAATTTGTCCTTGATT
TAGAAAATTAATGTAAACACCACTTTTTTTTGGAAAAAAATTTTTCCCNN
TGGAAAAATATGTTTTAAATTTTAAAAAANTATTTTTTTTTAAAAAAAAA
AAAAATGGGAGAGGGGCCCCTACAAAAAAACAAAATAAAAAAATAATTTG
CCTTTTATAAAAATTTTTTTTTTTCCCCCCCTCNNAAGAAAAAAATAAAT
TTTTCTTTTTTCTGCCCCCTAATTTTATAAAATAAAAAATTTTTTTTGTC
TCCCCAACCTTTATAAATAATAAATGTTTTTTTTTTTTTAAAACATAATC
TTTTTTCCCCCCTTCTTTTTTTTTTTTTCCCTTCTCCAATTTTTCTTTTT
TTTTATATANTTTTTTTTATTTCTTTTTTTTTTNTTTTTTTTTATTTAAT
ATAAAAGAAAAAGAAAAAGGACAAG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGCTGGAGCCGGGCATGGAGGTGCAC
GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC
AAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACA
GAGAAACCCTGTCTCGAAAACCCAAAAAACCAAAAACCCAAAAACCCCAA
AACCCAAAAAACCAAAAAAAAAAAACTCAACCCCCCCCAAAAAAAAGAAT
TCAGCGCTGAGTCCCCCACCAAGACTGAAATGGAGAACCTCCACCTCTTA
GCCTTCAGACTCATCTGCCTTGAGAAATCTGTTCCTACACACTTGTCACT
TACCTCCTGACTGAGGAAGATGGCTTCCTACACCTTTACAGTCCCTCAGA
ACCCCAGCAAGTGAAACAGAGCCCATGGGAGCGTGCTGCATTGGCAGTTG
CTACCCTAGCCCAGAAGTCACTAAGAGACTTCTTTGTCCTGGCTGGAGTT
TCAAAAAGGGATATAAAGAGTTTTCCAGTACAGGAAAGCTAAAATGCCCC
CTTAAAAGATAAACTTTAAAAAAAAATTCCCCGCGATAACGCCCCCGGTT
AAGAACTCTCTTCTAGTGGACCTGCCTTTAAATAGGGTTTCCATTCGTCC
TTCCACATATCTTTCTCCCTACTCCTTTTTTTAGAAAAGGCTTTTTTTTT
TGCGCTCCCCCGTGTTCCCAATTATTATCCCGCCTTCTCTTTTTCCCCTT
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_c24.g1 MSMg01no469_c24.g1 CHROMAT_FILE:
MSMg01no469_c24.g1 PHD_FILE: MSMg01no469_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:41 2005
         (446 letters)



>mm_chr6_4461302_4462154
          Length = 853

 Score =  609 bits (315), Expect = e-178
 Identities = 413/485 (85%), Gaps = 65/485 (13%)
 Strand = Plus / Minus

                                                                       
Query: 26  cacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggaca 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggaca 782

                                                                       
Query: 86  gcctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcga 145
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 781 gcctggtctacagagtgagttccaggacagccacggctatacagagaaaccctgtctcga 722

                                                                       
Query: 146 aaacccaaaaaaccaaaaacccaaaaaccc-------caaaa------------------ 180
           ||||||||||| ||||||||||||||||||       |||||                  
Sbjct: 721 aaacccaaaaacccaaaaacccaaaaacccaaaaacccaaaaacccaaaaacccaaaaac 662

                                                                       
Query: 181 ---------------cccaaaaaacc------------------aaaaaaaaaaaactca 207
                          |||||||||||                  ||||||||||||| | 
Sbjct: 661 ccaaaaacccaaaaacccaaaaaacccaaaaacccaaaaaccaaaaaaaaaaaaaacccc 602

                                                                       
Query: 208 acccccccca-a-----aaaaaagaattcagcgctgagtcccccaccaagactgaaatgg 261
           |||||||||| |     |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 601 accccccccacacacacaaaaaagaattcagcgctgagtcccccaccgagactgaaatgg 542

                                                                       
Query: 262 agaacctccacctcttagccttcagactcatctgccttgagaaatctgttcctacacact 321
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 541 agaacctccacctcttagccttcagactcatctgccttgagaaatctgttccta-acact 483

                                                                       
Query: 322 tgtcacttacctcctgactgaggaagatggcttcctacacctttacagtccctcagaacc 381
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cgtcacctacctcctgactgaggaagatggcttcctacacctttacagtccctcagaacc 423

                                                                       
Query: 382 ccagcaagtgaaacagagcccatgggagcgtgctgcattggcagttgctaccctagccca 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccagcaagtgaaacagagcccatgggagcgtgctgcattggcagttgctaccctagccca 363

                
Query: 442 gaagt 446
           |||||
Sbjct: 362 gaagt 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 853
Length adjustment: 10
Effective length of query: 436
Effective length of database: 843
Effective search space:   367548
Effective search space used:   367548
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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