BAC Information

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BAC

Clone NameMSMg01-469G12
Chromosome6 (Build37)
Map Location 138,801,856 - 138,802,435
singlet/doubletsinglet
Overlap genenone
Upstream gene9830102E05Rik, Mgst1, Lmo3, Igbp1b
Downstream geneEG668196, EG632971, LOC100043898, Pik3c2g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469G12.T7 (MSMg01no469_g12.b1)MSMg01-469G12.TJ (MSMg01no469_g12.g1)
ACCAG552650AG552651
length755753
length of high quality
(start - end)
582 (74 - 655)268 (322 - 589)
definitionCHROMAT_FILE: MSMg01no469_g12.b1 PHD_FILE: MSMg01no469_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:59 2005CHROMAT_FILE: MSMg01no469_g12.g1 PHD_FILE: MSMg01no469_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAACAGGATCCG
CGGAATTCTGTGATTCCCAGAGGGAAGGGAGAAACTAAGGATGTGCCTCA
GGGGGAAAGTTCTAGATGATTTAAAGAGTAAAGATAAAGAGGTTATAGCT
GGATGAGAAAGTGGGTGTAGTTAAATTATCTTTTCATTTTCCAGCATTTC
ATTTGGTTAGACAGGAGTGAAGAAAACAGAAGATTGGTGTTAACATCTGT
AGACTAGTGAACAGATTACAGATGATGAAAAGTTCTATTGACATTTCAAG
TGACACATCAAGCACCACCTATTTTTCTTGGTCTGTAGTGGAGAAATGTA
CATTTCTGCCTCCAGAGTTGTGTGGTTTAATTGCAGTTATTTGCAACAGA
AATTTGCAATCATCCAGTTTACTGTGTTTTCTGCAACTGTACACTTGCCC
TCTTCAGTGGTGGAATTGACAGTGTGTGCCACTATATGTTCCTAATGTCT
CATATAACATTGAAGAAAACATGCCATTATTTCAGGCTTTTTGTTGATTG
AAACTTGGTTTATTCTCAGTATTAACTAAAATAAACAATTCCATGATTAA
TATTTTAGAATATGACTCATTATTGAATAAATGTATGTATGAATGTATAT
ATGCATGTGTGTTTATGTATGAATGCAACCCACCCCCTTCTTTTCTTNCT
TCATTTCTCCATTCCTTTTACCTCCCATATCTCTTTTTTTCTTCCCCCTT
TTCTT
NCGATGCAGTGGGAGGNCTGGGGGCGCCTTTTCAAAACATTTAGGNGAAC
NANAGAATGTCAAACACAATCTCACCTGAGGAAACAGAATGGCTGAGAAA
CACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATTAA
AACAACCATGGGATTCCATCTCACAGCAGTCAGAATGGCTAAGATAAAAA
ATTCAGGTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCTTTT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTTAGGTGACAGTAGATGCTGGCATGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAA
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGATAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGATTATTCTAGCCAAATGGATGGACCTGGAGGGCCTCATTCTGAGTGA
TGTAACACCTTCTCTAAGAACTCTGAACACATGTATTTTTTGCACATTGC
ATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_g12.b1 MSMg01no469_g12.b1 CHROMAT_FILE:
MSMg01no469_g12.b1 PHD_FILE: MSMg01no469_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:59 2005
         (582 letters)



>mm_chr6_138801656_138802637
          Length = 982

 Score = 1083 bits (560), Expect = 0.0
 Identities = 575/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagggagaaactaaggatgtgcctcagggggaaagttctagatgatttaaagagtaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagggagaaactaaggatgtgcctcagggggaaagttctagatgatttaaagagtaaag 260

                                                                       
Query: 61  ataaagaggttatagctggatgagaaagtgggtgtagttaaattatcttttcattttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagaggttatagctggatgagaaagtgggtgtagttaaattatcttttcattttcca 320

                                                                       
Query: 121 gcatttcatttggttagacaggagtgaagaaaacagaagattggtgttaacatctgtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatttcatttggttagacaggagtgaagaaaacagaagattggtgttaacatctgtaga 380

                                                                       
Query: 181 ctagtgaacagattacagatgatgaaaagttctattgacatttcaagtgacacatcaagc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtgaacagattacagatgatgaaaagttctattgacatttcaagtgacacatcaagc 440

                                                                       
Query: 241 accacctatttttcttggtctgtagtggagaaatgtacatttctgcctccagagttgtgt 300
           ||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accacctagaattcatggtctgtagtggagaaatgtacatttctgcctccagagttgtgt 500

                                                                       
Query: 301 ggtttaattgcagttatttgcaacagaaatttgcaatcatccagtttactgtgttttctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtttaattgcagttatttgcaacagaaatttgcaatcatccagtttactgtgttttctg 560

                                                                       
Query: 361 caactgtacacttgccctcttcagtggtggaattgacagtgtgtgccactatatgttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caactgtacacttgccctcttcagtggtggaattgacagtgtgtgccactatatgttcct 620

                                                                       
Query: 421 aatgtctcatataacattgaagaaaacatgccattatttcaggctttttgttgattgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgtctcatataacattgaagaaaacatgccattatttcaggctttttgttgattgaaa 680

                                                                       
Query: 481 cttggtttattctcagtattaactaaaataaacaattccatgattaatattttagaatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttggtttattctcagtattaactaaaataaacaattccatgattaatattttagaatat 740

                                                   
Query: 541 gactcattattgaataaatgtatgtatgaatgtatatatg 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gactcattattgaataaatgtatgtatgaatgtatatatg 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)