Query= MSMg01no469_i24.b1 MSMg01no469_i24.b1 CHROMAT_FILE:
MSMg01no469_i24.b1 PHD_FILE: MSMg01no469_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:11 2005
(546 letters)
>mm_chr6_122853774_122854718
Length = 945
Score = 986 bits (510), Expect = 0.0
Identities = 537/550 (97%), Gaps = 9/550 (1%)
Strand = Plus / Minus
Query: 1 tacataataagaacttgtctctctatcctaaaggaataatatatactgaggaacaagaaa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 tacataataagaacttgtctctctaccctaaaggaataatatatactgaggaacaagaaa 686
Query: 61 aacaatcaccgccacaaaaacacaggagagtacattcaatgagaagaacaaatgaaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacaatcaccgccacaaaaacacaggagagtacattcaatgagaagaacaaatgaaccaa 626
Query: 121 aaatagctgggaagaaatcaattatgtccaacgcagcagattagcaaacctctatgctaa 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 625 aaatagctgggaagaaatcaattatgtccaatgcagcagattagcaaacctctatgctaa 566
Query: 181 tggagggaaaagaaaacaaataccaattatccaaccgatcagagcatcaatgaacaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggagggaaaagaaaacaaataccaattatccaaccgatcagagcatcaatgaacaaaac 506
Query: 241 catatgaaatag----cttttctgtctcaataagaaccttcaataaaaacatccccaaat 296
|||||||||||| | ||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 catatgaaatagcaaac----ctgtctcaataagaaccttcaataaaagcatccccaaat 450
Query: 297 caactaataaaaagatgcagactgacaaaactaaaaacaaaaagatctacctatctgttg 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 449 caactaataaaaagatgcagactgactaaactaaaaacaaaaagatctacctatctgttg 390
Query: 357 tctccaaggaatctactttgccactaaagacattaaaaaactgcatcaaaatatagaaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctccaaggaatctactttgccactaaagacattaaaaaactgcatcaaaatatagaaat 330
Query: 417 taatctaccaaaacaaaaccatgagtaggtagagcaattcttatatatgataaagaagtc 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 329 taatctaccaaaacaaaaccatgagtaggt-gagcaattcttatatatgataaagaagtc 271
Query: 477 ttcaaaatagtcagaagacttaaaggtaagcactacgtattatcaaaggaaactgctgga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttcaaaatagtcagaagacttaaaggtaagcactacgtattatcaaaggaaactgctgga 211
Query: 537 atccttgatg 546
||||||||||
Sbjct: 210 atccttgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_i24.g1 MSMg01no469_i24.g1 CHROMAT_FILE:
MSMg01no469_i24.g1 PHD_FILE: MSMg01no469_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:11 2005
(547 letters)
>mm_chr6_122694524_122695473
Length = 950
Score = 1006 bits (520), Expect = 0.0
Identities = 540/548 (98%), Gaps = 3/548 (0%)
Strand = Plus / Plus
Query: 1 ctgtgccgggttccctggggtcctcagtgctctgtgggagtggttgccaattgaccgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgccgggttccctggggtcctcagtgctctgtgggagtggttgccaattgaccgaaa 260
Query: 61 agtccaagtcccagtgagggtgaccaacgttgagggacaaagcactcaacagcctcatgg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 agtccaagtcccagtgagggtgaccaaccttgagggacaaagcactcaacagcctcatgg 320
Query: 121 ctgagatgcagtaacaacacctatctactacgtgtccttagattgcttgagag---ttct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ctgagatgcagtaacaacacctatctactacgtgtccttagattgcttgagagttcttct 380
Query: 178 atcttttctggatatcaaagagggagaagcacgaaggggactttaataaaagtacccagt 237
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 atctttgctggatatcaaagagggagaagcacgaaggggactttagtaaaagtacccagt 440
Query: 238 tgggagctaagagcatagtaggtgtgcttaggagagagggaacaagaacaatagcctggg 297
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggagctaagagcaaagtaggtgtgcttaggagagagggaacaagaacaatagcctggg 500
Query: 298 ataccagttcccaatgcacacacctgcacaattggagccccaatctggtctcctgctgtt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataccagttcccaatgcacacacctgcacaattggagccccaatctggtctcctgctgtt 560
Query: 358 agcctgttgaggtttgctagtgtgacaactaagcagaaggacaagggatcctacaaaaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctgttgaggtttgctagtgtgacaactaagcagaaggacaagggatcctacaaaaga 620
Query: 418 gcactcaagattttaaactcagcacagtgcccccggcctgggaaaacgcaagcagagcca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcactcaagattttaaactcagcacagtgcccccggcctgggaaaacgcaagcagagcca 680
Query: 478 gttgtaatgactgcccagaccccgtgctttacatttctatcagtccccacaaacagcaac 537
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgtaaggactgcccagaccccgtgctttacatttctatcagtccccacaaacagcaac 740
Query: 538 ctgcatgg 545
||||||||
Sbjct: 741 ctgcatgg 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 950
Length adjustment: 10
Effective length of query: 537
Effective length of database: 940
Effective search space: 504780
Effective search space used: 504780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
