Query= MSMg01no469_j21.b1 MSMg01no469_j21.b1 CHROMAT_FILE:
MSMg01no469_j21.b1 PHD_FILE: MSMg01no469_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:15 2005
(254 letters)
>mm_chr6_59363255_59363909
Length = 655
Score = 447 bits (231), Expect = e-130
Identities = 246/251 (98%), Gaps = 1/251 (0%)
Strand = Plus / Plus
Query: 1 cagtgccatgggcgtgtgttttctgatggtcttaggtgagccctgtgaaagggttgttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgccatgggcgtgtgttttctgatggtcttaggtgagccctgtgaaagggttgttca 260
Query: 61 acccccagaggttggaaaatg-tgcctagacatgaaagtgccagaggcatctccttacaa 119
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccccataggttggaaaatgctgcctagacatgaaagtgccagaggcatctccttacaa 320
Query: 120 atccacctataaatgaatgaaagcaagcttgctggtgagcagaagggtgtaggtaagaag 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccacctataaatgaatgaaagcaagcttgctggtgagcagaagggtgtaggtaagaag 380
Query: 180 ggtttatattggaaaaagtgtcaaggtcaacttaaggtcaggaaaaaaaccatgaaggac 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ggtttatattggaaaaagtgtcaaggtcaccttaaggtcaggaaaaaaaccatgaaggac 440
Query: 240 cgggggggggg 250
||||||||||
Sbjct: 441 tgggggggggg 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 655
Length adjustment: 9
Effective length of query: 245
Effective length of database: 646
Effective search space: 158270
Effective search space used: 158270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no469_j21.g1 MSMg01no469_j21.g1 CHROMAT_FILE:
MSMg01no469_j21.g1 PHD_FILE: MSMg01no469_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:15 2005
(455 letters)
>mm_chr6_59519749_59520603
Length = 855
Score = 803 bits (415), Expect = 0.0
Identities = 445/455 (97%)
Strand = Plus / Minus
Query: 1 acatcaaatgtaattagccccagagctatgcacaatagcactggccagtgaaatagtcag 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 acatcaaatataattagccccagagctatgcacaatagcactggccagtgaaatagtcag 633
Query: 61 attttctcaaactgcatagggcaatgtagctttcaggtggtcctgttgccttcacagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 attttctcaaactgcatagggcaatgtagctttcaggtggtcctgttgccttcacagcat 573
Query: 121 catagggcaagatacagttaagaaactcagcaagaaaccttgtggatgggcatatgccaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tatagggcaagatacagttaagaaactcagcaagaaaccttgtggatgggcatatgccaa 513
Query: 181 tagacctatatgtggtttctgccttgggcctaaacaggctatatgtatgggcatctcaac 240
|||| |||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 512 tagagctatatgtggtttctgccttgggcctaaacaggctatatgtatgggaattttaac 453
Query: 241 attagtgccctgtatcagactaggaaagagattctatggatatgaattccatttgggttt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 attagtgccctggatcagactaggaaagagattctatggatatgaattccatttgggttt 393
Query: 301 ggtgccagaagggtggaataagggttatcctgtgacttagattaattcttaatatctccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggtgccagaagggtggaataagggttatcctgtgacttagattaattcttaatatctccc 333
Query: 361 tgcttttaaagattttagttctgacaggtttatgtcaaataattataaatgaattaacct 420
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 332 tgcttgtaaagattttagttctgacaggtttacgtcaaataattataaatgaattaacct 273
Query: 421 cttattatttcagaaaatattgaaagagaagagtg 455
|||||||||||||||||||| ||||||||||||||
Sbjct: 272 cttattatttcagaaaatatagaaagagaagagtg 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
