BAC Information

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BAC

Clone NameMSMg01-470E10
Chromosome6 (Build37)
Map Location 47,192,307 - 47,192,550
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E10.T7 (MSMg01no470_e10.b1)MSMg01-470E10.TJ (MSMg01no470_e10.g1)
ACCAG553316AG553317
length795779
length of high quality
(start - end)
234 (86 - 319)246 (80 - 325)
definitionCHROMAT_FILE: MSMg01no470_e10.b1 PHD_FILE: MSMg01no470_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:08 2005CHROMAT_FILE: MSMg01no470_e10.g1 PHD_FILE: MSMg01no470_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTACTCTACCCAGAAACCGTGGGGNGGATCCCTGGATAAGG
CAGTCTCTACATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTCTG
TAACTCCTTCCAAGGGTGTTTTGTTCCCACTTCTAAGGAGGGGCATAGTA
TCCACACTTCAGTCTTCATTTTTCTTGAGTTTCATGTGTTTAGGAAATCA
GTACTCTTTAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTA
GTCGGCCATCACTGGAAAGAGATTCTCATTGGACACACAAACTTTATATG
CCCCAGAACAGGTTAATGCCAGGGCCAAAAAGGGGGAGTGGCCGGCTAGG
GCAGTGTTTCTTTCCCTCCCCCCCCCCTTTTCCTTTCCCTTCTTCCCTTT
CTTCCCCCCCATTTCCCTTTCTTCCTCTCTCTTCCCTCTCCCTTCATTCC
CTTCCCTCACCCCGCCTCCTCCCCTTTCTTCCCCCCCCCCCCCCCTTTTT
CCTCCTTTCTTCCCTTCTCTTCCCCCTTTCTTTACCTCCTTTTCCCTCAA
CCATTTTCCTCTCTCCCTTCCCCCCTTTTTTCCCTATCTCTCTCTCTATT
CTCCATTTCCCTCCTCCCTCCCTATTTTCCCCCCTCCCTTTTTTCTTTTC
CCTTTCATTATTTCCCCCCTTTATTCCACCCCTCTACCCCCACCTTTCCT
CCATCTCCATCTCCCTTTCACTTCCTGATTTTTTCCCCTTCCCCC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGGTGCAGAGGGAAGTGG
CCTGATGCTCTGGAGACTGGCAGGTGCTCAGGGTAAAAGGAAGCCACTTA
GATTTGTGTGGCAAAGGCTTTCCCAGGGGCTGCAGTCAAATGCTTTAGAC
TTCAAGGGAAGTAGAGTAGAGGGAGAGTGTCTATGAGGAAGGAACCTAGA
TGGGCCTATTGTTTCCTGAGGGGAAATGTCAAAGGGACTTCTGTGTTGTT
TACTGCATCTCTCTTGTACCCAATGTCTTGGTTCCACCTCCAAGCAGTCC
GCGCTTCTTGAGTGTATGAATGAGAAATACTCAGCTAGACACTCACACAG
TGTCTACTTCATTTGACTCTTACAGCCATTGTGGGAGAGAGATTGCTATT
CTTTCTTCTTGGGCCATCCCTTGTACTCAGATAAGTCAAACAATTGCCCC
ATAGCGCCTCACCCAATTAATCACCGCCTATGCGTCTTCTCATGGTCGAT
CCCCGCTTCTCCTCATTTCTTTCCTTTCGTTCTTCCCTTTCTGTCCCCGC
CTCCCTTTGTTCCCCTTTTTTTCGCGATATTTTCCACCCCATCTCGCCCT
CTTACGCCACCGTAGGCTTCTCCTTTTTTTACTTTCTTCTTTTCTTCATT
CTCGTTCCCTTCTCATTTCTCCCTATACCCCCTCTTCTTCTTCTCCTGCC
CTTAACCTTCTACCTTATCTTCTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e10.g1 MSMg01no470_e10.g1 CHROMAT_FILE:
MSMg01no470_e10.g1 PHD_FILE: MSMg01no470_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:08 2005
         (246 letters)



>mm_chr6_47192107_47192750
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 238/246 (96%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataggtgcagagggaagtggcctgatgctctggagactggcaggtgctcagggtaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tataggtgcagagggaagtggcctgatgctctggagactggcaggtgctcagggtaaaag 385

                                                                       
Query: 61  gaagccacttagatttgtgtggcaaaggctttcccaggggctgcagtcaaatgctttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 gaagccacttagatttgtgtggcaaaggctttcccaggggctgcagtcaaacgctttaga 325

                                                                       
Query: 121 cttcaagggaagtagagtagagggagagtgtctatgaggaaggaacctagatgggcctat 180
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 cttcaagggt--tagagtagagggagagtgtctatgaggaaggaacctagatgggcctag 267

                                                                       
Query: 181 tgtttcctgaggggaaatgtcaaagggacttctgtgttgtttactgcatctctcttgtac 240
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 tggttcctgaggggaaatgtcaaagggacttctatgttgtttactgcatctctcttgtac 207

                 
Query: 241 ccaatg 246
           | ||||
Sbjct: 206 ctaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 644
Length adjustment: 9
Effective length of query: 237
Effective length of database: 635
Effective search space:   150495
Effective search space used:   150495
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)