BAC Information

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BAC

Clone NameMSMg01-470K17
Chromosome6 (Build37)
Map Location 26,060,888 - 26,061,419
singlet/doubletsinglet
Overlap geneLOC100041210
Upstream geneGpr37, Pot1a, EG626912
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K17.T7 (MSMg01no470_k17.b1)MSMg01-470K17.TJ (MSMg01no470_k17.g1)
ACCAG553618AG553619
length738751
length of high quality
(start - end)
485 (72 - 556)533 (77 - 609)
definitionCHROMAT_FILE: MSMg01no470_k17.b1 PHD_FILE: MSMg01no470_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:39 2005CHROMAT_FILE: MSMg01no470_k17.g1 PHD_FILE: MSMg01no470_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTGATCTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GGAGCCCACCTTCTTGAGTTCTTTATATATATTGAATATTAGTTCCCTAT
CTGATTTGGGATAGGTGGAGATCCTTTCCCACTCTGTTGGTGGTCTTTTT
GGCTTATTGATGGTGTCTTTTGACTTGCAGAAGCTTTGCAGCTTTATGAG
GTCCCATTTATCGATTCTCGATCTTACAGCAAAAGCCATTGCTCTTCTAT
TCAGGAATTTTATCCCTTTGTTAATATATTTGAGGCTTTTCCCTGCTTTC
TCCTCTATAAGTTTGAGTGTCTCTGCTTTTATGTGGAGTTCCTTAATCCA
CTTAGATTTGACCTTAGTACAAGGAGACAGAAATGGATCAATTTGCACTG
TTCTACATGATAATCGCCAGTTGTGTCAGCACAATTTGTTGAAAATGCTG
TCTTTTTTCCACTGGATATTTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAGGTGCGTGGGTTCCTCTCTGGGTCTTTAATTCTGTTCCATTGGCCTA
CTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCACCATTTGCTCT
GTACTACAGCTTTAGGTCAGGCATGGTGATTCCCCCACGAGGTTCTTTTA
TTCTTGAGAACAGTTTTTGCTATCCCACGGTTTTGGCA
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTTACATGTCGCACTTTCTG
AGGTTTTGAAAGTATGTGCACTGTTAACTTACTATACTTCTGTGTAGTTC
AGTAGATGAGAAGCCCCACTGCATGTTTCTGCTGTAGAGTTGGGAGCCAT
TTCATCTAGCGGAAGGTTGCACTGTAACAAGCTCTCCTGCACAACACTGC
GTATTCCTCCAGTTAGTTTCTAGAGTCTAACCTCAGAAAAAGGTGAGGCA
AGTGAACTCTCCTCATTCAGTATTTATCTCTTTCTTGGAGTTCAGTGCCT
TTTCTTCTGAAAACCTTCAATGGAGAAACCCTCTGAGGAGCTTATCAACA
CTAATCTCTTTAATTATTGTTCTGCCAGGAGGAACATGCATTTAACTGAG
GTTAAAGGCCTAAAGCTGTAGTAAGAGTAGAGTTTTCGCACTTTTAAATT
GGATGGGAAAGGCGTCTTTGGAAAGAAAAAAATGCCAAGGAAAGGAAAAA
GGATGATGCTTTTTTAAAATCATGAGATTTTAAAAACATCCCTCCATAGT
AACTAATCCAATTAAAACAAATGCTTAGACAGAACCAGGTACCTTGAATT
TATTCTTGCCATAAAAATGTATTGCAAAACTGAGTACCGGGAATTTAAGC
AGCCCATTTTGCCTTACAAAGAGCCTTACTGTATCACTATGGTTATAATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k17.g1 MSMg01no470_k17.g1 CHROMAT_FILE:
MSMg01no470_k17.g1 PHD_FILE: MSMg01no470_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:39 2005
         (533 letters)



>mm_chr6_26060687_26061619
          Length = 933

 Score = 1006 bits (520), Expect = 0.0
 Identities = 529/532 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   aattttacatgtcgcactttctgaggttttgaaagtatgtgcactgttaacttactatac 61
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aattttgcatgtcgcactttctgaggttttgaaagtatgtgcactgttaacttactatac 261

                                                                       
Query: 62  ttctgtgtagttcagtagatgagaagccccactgcatgtttctgctgtagagttgggagc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttctgtgtagttcagtagatgagaagccccactgcatgtttctgctgtagagttgggagc 321

                                                                       
Query: 122 catttcatctagcggaaggttgcactgtaacaagctctcctgcacaacactgcgtattcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catttcatctagcggaaggttgcactgtaacaagctctcctgcacaacactgcgtattcc 381

                                                                       
Query: 182 tccagttagtttctagagtctaacctcagaaaaaggtgaggcaagtgaactctcctcatt 241
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 tccagttagtttctagagtctaacctcagaaaaaggtgagacaagtgaactctcctcatt 441

                                                                       
Query: 242 cagtatttatctctttcttggagttcagtgccttttcttctgaaaaccttcaatggagaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagtatttatctctttcttggagttcagtgccttttcttctgaaaaccttcaatggagaa 501

                                                                       
Query: 302 accctctgaggagcttatcaacactaatctctttaattattgttctgccaggaggaacat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 accctctgaggagcttatcaacactaatctctttaattattgttctgccaggaggaacat 561

                                                                       
Query: 362 gcatttaactgaggttaaaggcctaaagctgtagtaagagtagagttttcgcacttttaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcatttaactgaggttaaaggcctaaagctgtagtaagagtagagttttcgcacttttaa 621

                                                                       
Query: 422 attggatgggaaaggcgtctttggaaagaaaaaaatgccaaggaaaggaaaaaggatgat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attggatgggaaaggcgtctttggaaagaaaaaaatgccaaggaaaggaaaaaggatgat 681

                                                               
Query: 482 gcttttttaaaatcatgagattttaaaaacatccctccatagtaactaatcc 533
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 682 gcttttttaaaatcatgagatttaaaaaacatccctccatagtaactaatcc 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)