NACGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATACATTATTACAATATGAGTCCTACCTCTACTAAATTGTGAGT
GTATTTGTGAAGCTTAAAGTACTGAAATCACATCACCGAAACAAGTGAAG
CTAAATAAGAGAGATGCTGAGTTTTATTTTAATCCATTTCTCCTTGGAAC
ACTTATTTGTGGTCGAGTTTCCTAAGCATGATTTTAGATCTTGTCAAACT
GCATGTTGTGTTAGTTGATCCTCCATTGTGTGACCATTCTCATATAATTG
GCAGCAACTTTCATCTACATTGTACTTTCCATCGTCTTTCTGTCATGGGC
CTTCTCTGACCCCATGGCTGTGGAACATCCACAGGTAACCATTGGGTAGC
AAATATTCACAAAGCTGTTGTATAAATGAGTTAATGCAACATGCAATAGA
CTTTGGGTCCAAAAAGCTCAGTAATGATAGTCAGACGAAGATGAAATTTA
CGTAAAATTGGTCTGGAAGAGTCCCTCATTACATAACCATGTGTACAACC
AAGTGATATGTCCTTATATTGACCCTTCTTTATTGTGTTCCCATATTTCA
TGTCTGCTTCTTGAGCTCATGTTCCACATATATACTCAGATGTACACCTT
TATTTTAGCTCTGCCTTGTAGGAAGCCAAGAATATATAACTCAGCTTAAG
TATAAGAAAGAAATGAATTGCCNAGAGAATAGTCATACTTAAGCCTTTAT
TCTACATTCTGAGAA

NCCATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTATAGNAAAGGAATTCCCCCCCGGAAAATTTTCTTTTTCCC
CCACGGTTATTTTCCCCCCCCCCCCTTTATAAAAAATTTTTTCCCTTTCT
TTTTTTTCTCTTNNNTCTCCTTTCCATTTAAATCCCCCCCCCCCCCTTTG
TTGGTGGGGGGGGGGGGTGGCCCAAAAAAAATAATTTTTTTTTTTAAAAA
CCGGGGGCCAAATATAAAAAAAGAGAGAGAGGTGTTTTCTCCCCCCCCCC
CCCGGGGGGGGGGGGTGGGGTCTCTCTTTTTTTTTTTTTTTTTTTCCTTT
TCTTANNAAAAAAAACAAACTTCATTGTCGTGTNTCGTTCTTTGTATAAA
ATAATAAAAAAAANNACNNATATATCTATATAANNATAACAGCTTAAAGC
ATAGNATATAAATTATCAAAGAANNNAAANNAANNAAAAAAATAAAAACC
CTTTTTTTTCTTCTCTCCGCCCCCCCCTCTTTTTTTCTTTTNNAAAAACT
TTTTTTTTTTTTTGTTGGGGGGGGGGCCCCCCCCCCCCCCCCCCACCAAA
AAAAAGATTTATTTATTTTTTTTTTTTNCCCCCCCCCTCCCAACCTCAAC
ACAAAAAGC

Query= MSMg01no471_b19.b1 MSMg01no471_b19.b1 CHROMAT_FILE:
MSMg01no471_b19.b1 PHD_FILE: MSMg01no471_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:14 2005
         (623 letters)



>mm_chr6_104425908_104426930
          Length = 1023

 Score = 1141 bits (590), Expect = 0.0
 Identities = 614/624 (98%), Gaps = 5/624 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatacatta-t----tacaatatgagtcctacctctactaaattgtgagtgtatt 59
           |||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcatacattaatacaatacaatatgagtcctacctctactaaattgtgagtgtatt 259

                                                                       
Query: 60  tgtgaagcttaaagtactgaaatcacatcaccgaaacaagtgaagctaaataagagagat 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 tgtgaagcttaaagtactgaaatcacatcactgaaacaagtgaagctaaataagagagat 319

                                                                       
Query: 120 gctgagttttattttaatccatttctccttggaacacttatttgtggtcgagtttcctaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctgagttttattttaatccatttctccttggaacacttatttgtggtcgagtttcctaa 379

                                                                       
Query: 180 gcatgattttagatcttgtcaaactgcatgttgtgttagttgatcctccattgtgtgacc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatgattttagatcttgtcaaactgcatgttgtgttagttgatcctccattgtgtgacc 439

                                                                       
Query: 240 attctcatataattggcagcaactttcatctacattgtactttccatcgtctttctgtca 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 attctcatataattggcagcaactttcatctacattgtactctccatcgtctttctgtca 499

                                                                       
Query: 300 tgggccttctctgaccccatggctgtggaacatccacaggtaaccattgggtagcaaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgggccttctctgaccccatggctgtggaacatccacaggtaaccattgggtagcaaata 559

                                                                       
Query: 360 ttcacaaagctgttgtataaatgagttaatgcaacatgcaatagactttgggtccaaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcacaaagctgttgtataaatgagttaatgcaacatgcaatagactttgggtccaaaaa 619

                                                                       
Query: 420 gctcagtaatgatagtcagacgaagatgaaatttacgtaaaattggtctggaagagtccc 479
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctcaggaatgatagtcagacgaagatgaaatttacgtaaaattggtctggaagagtccc 679

                                                                       
Query: 480 tcattacataaccatgtgtacaaccaagtgatatgtccttatattgacccttctttattg 539
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcattacataaccatgtgtacaaacaagtgatatgtccttatattgacccttctttattg 739

                                                                       
Query: 540 tgttcccatatttcatgtctgcttcttgagctcatgttccacatatatactcagatgtac 599
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740 tgttcccatatttcatgtctgcttcttgagctcacgttccacatatatactcagatgtac 799

                                   
Query: 600 acctttattttagctctgccttgt 623
           ||||||||||||||||||||||||
Sbjct: 800 acctttattttagctctgccttgt 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)