BAC Information

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BAC

Clone NameMSMg01-471G02
Chromosome6 (Build37)
Map Location 115,988,092 - 115,988,627
singlet/doubletsinglet
Overlap geneTmcc1
Upstream geneLOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1
Downstream geneLOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471G02.T7 (MSMg01no471_g02.b1)MSMg01-471G02.TJ (MSMg01no471_g02.g1)
ACCAG554161AG554162
length819736
length of high quality
(start - end)		---538 (81 - 618)
definitionCHROMAT_FILE: MSMg01no471_g02.b1 PHD_FILE: MSMg01no471_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:36 2005CHROMAT_FILE: MSMg01no471_g02.g1 PHD_FILE: MSMg01no471_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGGGCAACGGACCTCCCGTGGCACAACCACATCATAACCTCCCGGCG
AGGGGACCGAGAAAATCCCGCCTAAACACGTGCGGGCCAAATAAAAACCG
CGGAGGGTGCGGCGGCGGAGCTAAAAAACCCCACCCCCGGCGGGCGGGGT
GGGGACGCACCACCACCCCCCTACAAAGATGGCCCCCGGAACCAGGAAAA
AGAAAGGCGAAGTCCCTAACAAAAAAAACTCCCCGGCCCCNCGGGGGGGG
GNAAACGTCACTTATTACGAACAACACGAGAGTCCGNCGNGAAAATTTCC
CATTTTTTTTTTTATCCCCCCGAAAAGAACAAAGGGGGGGGCCCCAGCGA
AAAGCCCAAGGGGGCCCCAGGAAAGGCAAAGCAAGGAGGGTCCCTGGAAG
TTCAATTTCCCAAACAAATCACAAATTATGGGCTTCAATAAACCATTCTG
TTACCAGGTTAACGGGGGTACCTCCTTATTACCTTAAAAAACAAAACCAA
AATAAAATCCCTTTTAAAAAAAAAAAAGAAATTTCCCCTTAAAACCTCGG
ACAGGAACTGGAACCCCCTTTTTGGGAAAAACAACAAAGGCTATAAATTT
TAACCCCCCCAAACAAAAAACACGCGGGGGGGTGGGGGGGAGACAAACCT
TCCTATGTGAGCAAATAACCACGGACGATACCCTTATTCATAAAGTCCGG
CCGGCGTGCGCGGCCAATAAAAACAAACAAAAAGACCCCCGGCGTGCCNC
CCCGCCCCCCTCTTTTCTTTTTTTTTATAAAACAAAAAAAACCGGAGGGG
CCCGCGCGCCAAAAAAAAA

NNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAAGCTAATACAACCA
AAACTAATATAACAGTGTAGGTAGTGAAATCTCCTTGAGACCCTGGAGCC
CTCTTCCCCTTCAGAGCCATTCTCATCAGTGCCACCACTTGCTTCCACGC
TTCCACTGTGTTCTGCCCCTGTGAACTGGAGATAGTTTGCTTAACTCTGC
CAGTAATCAGATATTCCGGTGCCTCTGTCTCACCCACACACTTGTGCCTG
ACAGGCTGGGCAGCCATGATAGCAAAGCCTACATCTGGGTTCTGCTTCAC
CCTTTGAAAGGAATTAGTTGTGAGTCTTTATAAGCTTTGCACCAGACCTC
TTTTTTTTTTTTTTACATATTTTTCATGTGCATTGGTATTTTGCTTGCAT
ATCTGGGTTTTTTTTGGGGGGGGTCAGCTCTTCTGGAACTGGACTTACAG
ACAATTGTGATGTGCCATATGGGTGCTGGGAATTGAACTCTGGTCCTTTG
GAAGAGTAGTCAACGTTCTTAACCACTGAGCCATCTCTCCAACCCCTATA
TAGGACTTTAAATTATGAGTGAGATCCGTGAGGAGAAAGGAATGAGGTTT
AATAAAGTTTTAAGTGATGAGAGCCCTGTGGACTTCATATTTCCTTACCC
AGGTCCCTTTGTCATCTCTCTAAGTTTTAGTATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_g02.g1 MSMg01no471_g02.g1 CHROMAT_FILE:
MSMg01no471_g02.g1 PHD_FILE: MSMg01no471_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:37 2005
         (538 letters)



>mm_chr6_115988047_115988980
          Length = 934

 Score = 1006 bits (520), Expect = 0.0
 Identities = 533/540 (98%), Gaps = 6/540 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgaaagctaatacaaccaaaactaatataacagtgtaggtagtgaaatctccttgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgtgaaagctaatacaaccaaaactaatataacagtgtaggtagtgaaatctccttgaga 522

                                                                       
Query: 61  ccctggagccctcttccccttcagagccattctcatcagtgccaccacttgcttccacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ccctggagccctcttccccttcagagccattctcatcagtgccaccacttgcttccacgc 462

                                                                       
Query: 121 ttccactgtgttctgcccctgtgaactggagatagtttgcttaactctgccagtaatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttccactgtgttctgcccctgtgaactggagatagtttgcttaactctgccagtaatcag 402

                                                                       
Query: 181 atattccggtgcctctgtctcacccacacacttgtgcctgacaggctgggcagccatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atattccggtgcctctgtctcacccacacacttgtgcctgacaggctgggcagccatgat 342

                                                                       
Query: 241 agcaaagcctacatctgggttctgcttcaccctttgaaaggaattagttgtgagtcttta 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agcaaagcctacatctgggctctgcttcaccctttgaaaggaattagttgtgagtcttta 282

                                                                       
Query: 301 taagctttgcaccagacctcttttttttttttttacatatttttcatgtgcattggtatt 360
           ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||
Sbjct: 281 taagctttgcaccagacctc----ttttttttttacatatttttcatgtgcattggtatt 226

                                                                       
Query: 361 ttgcttgcatatctggg--ttttttttggggggggtcagctcttctggaactggacttac 418
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttgcttgcatatctgggttttttttttggggggggtcagctcttctggaactggacttac 166

                                                                       
Query: 419 agacaattgtgatgtgccatatgggtgctgggaattgaactctggtcctttggaagagta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 agacaattgtgatgtgccatatgggtgctgggaattgaactctggtcctttggaagagta 106

                                                                       
Query: 479 gtcaacgttcttaaccactgagccatctctccaacccctatataggactttaaattatga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtcaacgttcttaaccactgagccatctctccaacccctatataggactttaaattatga 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 934
Length adjustment: 10
Effective length of query: 528
Effective length of database: 924
Effective search space:   487872
Effective search space used:   487872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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