BAC Information

Click to search

BAC

Clone NameMSMg01-471I09
Chromosome6 (Build37)
Map Location 75,757,292 - 75,757,673
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471I09.T7 (MSMg01no471_i09.b1)MSMg01-471I09.TJ (MSMg01no471_i09.g1)
ACCAG554271AG554272
length752768
length of high quality
(start - end)		621 (77 - 697)551 (81 - 631)
definitionCHROMAT_FILE: MSMg01no471_i09.b1 PHD_FILE: MSMg01no471_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:48 2005CHROMAT_FILE: MSMg01no471_i09.g1 PHD_FILE: MSMg01no471_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCGCAGAGGATCCG
CGGAATTCCTACTATTTCACAAGTAGTCAGCTACAAGGTCTTTCTAGGGC
GTTGGCACACTGGCAAAGACTAACTGTATAGGATATAATTTTGAAAAGCA
GTATAGTAAAATAACACTAAAGGAGAGTACTTGGATTCTCCTCAACAGCC
TTGGATGACAGGCAGGAAACAGAGAGGAGGGGGTGATGACCAGCTCCCTA
GCACAAAGACATTTGGCTTGTTAGGGTGGGAGGCTGTGAAGGGCTTGCCC
TTTTCACTGTATGGTCTCCTTCTTCTCTCCCCCTTTTGAATTAAGCTTAA
TAAGGCCACAATTAACTAAGGTGATCAAATGATTTTCTCATCTTTGAATG
AGTGGGCCTTAACTATGGTTGGGGGAGTATTGACTTGATTGTTTTCGTGA
GTGCTATCACGACCCACAATCATGGTGAAAGAACCTATTGGGAAAACCCC
CACTATGTTCCCTATTTGGCGTGCACCCAAGAATCACAAACAAACAGACC
ATTTTGATGTAAAAACATGAGGTAGTTTAATGGCAGAGCTCCAGGTCGAA
ATGTTTCTCATGTAGGAGAGAGTGGATTCGACCACAAGGCTTGGAAGCTA
GGGGTTTTTATAGAAAAGGGGCTGGGGCTGGGGCTGGGGGAGCAATTGGC
GCAGTTTCACATGATTGGTCCATTTTAATGTCAGCAGACTTTACATGCAG
AG

TTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTATTCTGTAACTCCTT
AATCTTCAATTTTCTTGTTGCTCCTGTTAGCACAATAGATAGAGAGCACA
GACCCTCATCTTGTTTTTGAATTTATGGAAATGCTTTGGGTTTCTCTGTT
AGTTGATGTTGGCTGTGGGCTTCCTGTAAATCCTTTTGGTTACCCTTTAC
ATTGCTACTTTCTCCAGGACTTTTATCTTGAAAGTGGTTGGATTTTGTCA
AAAGCATTTTCTTATGTATGCTGATGATCATATGGTTTTCTGTTTTTCAA
TTTGTTTATATGGTAGTTTATAGTTATTGATTTATATATGCTGTACTTTC
ACTGCATCTCTAGGATAAAGTTTACTTGGCAATGTTATATAATATTTTGC
TAATTTTAATTCTAATTAATTATCTTAGTGTTCACTCAGAATAGTAAAAA
TGTTTTAGTACATCCAATTTTTAATTTAGTGTCATTCATGATGTATTAAA
GGAATGAATTCTGTTTAAAGAACATTACTACATCTTCTATGATTAAATAT
TATGCCAAAACAATTTATTTTATTCTTATTGGTTAATATTATGGACTAAT
TCCTATAATTTAGATTGCTTTTCATTAGACGACCATACTTACTATACTAA
TTCCATTGATCCATGAGTGTTGGAGATCTTTCTATCTTCTGATACCTCTC
TTATTTCTTTTTAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_i09.g1 MSMg01no471_i09.g1 CHROMAT_FILE:
MSMg01no471_i09.g1 PHD_FILE: MSMg01no471_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:48 2005
         (551 letters)



>mm_chr6_75756723_75757673
          Length = 951

 Score =  731 bits (378), Expect = 0.0
 Identities = 381/382 (99%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 171 attgctactttctccaggacttttatcttgaaagtggttggattttgtcaaaagcatttt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 attgctactttctccaggacttttatcttgaaagtggttggattttgtcaaaagcatttt 892

                                                                       
Query: 231 cttatgtatgctgatgatcatatggttttctgtttttcaatttgtttatatggtagttta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 cttatgtatgctgatgatcatatggttttctgtttttcaatttgtttatatggtagttta 832

                                                                       
Query: 291 tagttattgatttatatatgctgtactttcactgcatctctaggataaagtttacttggc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tagttattgatttatatatgctgtactttcactgcatctctaggataaagtttacttggc 772

                                                                       
Query: 351 aatgttatataata-ttttgctaattttaattctaattaattatcttagtgttcactcag 409
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aatgttatataatatttttgctaattttaattctaattaattatcttagtgttcactcag 712

                                                                       
Query: 410 aatagtaaaaatgttttagtacatccaatttttaatttagtgtcattcatgatgtattaa 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aatagtaaaaatgttttagtacatccaatttttaatttagtgtcattcatgatgtattaa 652

                                                                       
Query: 470 aggaatgaattctgtttaaagaacattactacatcttctatgattaaatattatgccaaa 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aggaatgaattctgtttaaagaacattactacatcttctatgattaaatattatgccaaa 592

                                 
Query: 530 acaatttattttattcttattg 551
           ||||||||||||||||||||||
Sbjct: 591 acaatttattttattcttattg 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |