Query= MSMg01no471_j15.b1 MSMg01no471_j15.b1 CHROMAT_FILE:
MSMg01no471_j15.b1 PHD_FILE: MSMg01no471_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:54 2005
(696 letters)
>mm_chr6_9876533_9877631
Length = 1099
Score = 1201 bits (621), Expect = 0.0
Identities = 673/699 (96%), Gaps = 18/699 (2%)
Strand = Plus / Plus
Query: 5 gaattctatacta-ttcatttttgttacactctggaactatcctcagttattattggtat 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattctatactacataatttttgttacactctggaactatcctcagttattattggtat 271
Query: 64 gaaaacaagttaatatatattatatatcaatgtatttatatattatagcatatatatttt 123
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 272 gaaaacaagttaatatatat--------aatgtatttatatattacagcatatatatttt 323
Query: 124 atataatatatactaacatgctaatgtatacctattattggtatatataaaaattctgtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atataatatatactaacatgctaatgtatacctattattggtatatataaaaattctgtg 383
Query: 184 ataggtctcttgagggacaatgtagcctgggatttgtatcctgctcagttttgtagcttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataggtctcttgagggacaatgtagcctgggatttgtatcctgctcagttttgtagcttc 443
Query: 244 aagtctgaaaccgtcatcttctgaagaaatgtaatctaaatgttttgctcagttctccag 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 aagtctgaaaccgtcatcttctgaagaaatgcaatctaaatgttttgctcagttctccag 503
Query: 304 taagctacaaaactacttataaaatcctattttaacaaccattttaaaattcttcctaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taagctacaaaactacttataaaatcctattttaacaaccattttaaaattcttcctaat 563
Query: 364 caaaaattttaacctcaacatgctgaaaatggcatacactattgctatgccttatcaact 423
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 564 caaaaaatttaacctcaacatgctggaaatggcatacactattgctatgccttatcaact 623
Query: 424 acctctaagcttgtttttaaacctagtca--aaaaaagtcacaaacctaaacattttctt 481
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 624 acctctaagcttgtttttaaacctagtcaccaaa---gtcacaaacctaaacattttctt 680
Query: 482 agaaaactc----actttgtgccatctgttctagttgcatggttcccttgcatgctctag 537
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaaactctctcactttgtgccatctgttctagttgcatggttcccttgcatgctctag 740
Query: 538 cttagtttatagcattatatcctaactcagcttttaaacgttagtgttttccattcaaat 597
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 cttagtttatagcattatatcctaactcagcttttaaactttagtgttttccattcaaat 800
Query: 598 ttaatccaaataaaatctattacaaagattaagtatatgcactcattaaggtatatttgc 657
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaatccaaataaaatctactacaaagattaagtatatgcactcattaaggtatatttgc 860
Query: 658 ctttaataattgatatactttgccctttctatgtcctat 696
|||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctttaataattgatatactttgccctttctatgtcctat 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1099
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1089
Effective search space: 747054
Effective search space used: 747054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_j15.g1 MSMg01no471_j15.g1 CHROMAT_FILE:
MSMg01no471_j15.g1 PHD_FILE: MSMg01no471_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:54 2005
(684 letters)
>mm_chr6_10058657_10059740
Length = 1084
Score = 1058 bits (547), Expect = 0.0
Identities = 559/563 (99%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 123 atatcacatccatcacttcaaactaaacttgataaagagagatacatgaaaaatagaagt 182
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1084 atatcacatccatcacttcaaactaaatttgataaagagagatacatgaaaaatagaagt 1025
Query: 183 agaatgaaatatgacaggaacaatgatgttattctttcctgggctcttgagctacaaagg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 agaatgaaatatgacaggaacaatgatgttattctttcctgggctcttgagctacaaagg 965
Query: 243 agaaaagtagtaactcaacattgaaggttagcaaatactttatggagtttttataaatat 302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 964 agaaaagtagtaactcaacattgaaggttagcaaatactttatggagattttataaatat 905
Query: 303 ttttaatgtatttttttt-aggatggcttaagtggcttggaatgtaaggataaaatgcca 361
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ttttaatgtattttttttcaggatggcttaagtggcttggaatgtaaggataaaatgcca 845
Query: 362 gagtaggaatgatgaacagagatgcaagctgaaatgagtggcaagaagactcaagtgatc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gagtaggaatgatgaacagagatgcaagctgaaatgagtggcaagaagactcaagtgatc 785
Query: 422 aaagtctcatgacctcttttgtgtttatctgagggtatgtatttgttgtgtccaagtgac 481
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaagcctcatgacctcttttgtgtttatctgagggtatgtatttgttgtgtccaagtgac 725
Query: 482 acactaaatgtctgcacatgtgtatattttataatatactctgtggtaataagtgattgg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 acactaaatgtctgcacatgtgtatattttataatatactctgtggtaataagtgattgg 665
Query: 542 tttgatttagagaggatctaaatgtgtctaggctacttatgtgatgctggaaaatttgtt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttgatttagagaggatctaaatgtgtctaggctacttatgtgatgctggaaaatttgtt 605
Query: 602 agggaaactatgaccagtgatgcttcattatattgtcattattgttttaattgaattatt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agggaaactatgaccagtgatgcttcattatattgtcattattgttttaattgaattatt 545
Query: 662 aatgtaactactatttactgtat 684
|||||||||||||||||||||||
Sbjct: 544 aatgtaactactatttactgtat 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
