BAC Information

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BAC

Clone NameMSMg01-473J14
Chromosome6 (Build37)
Map Location 92,202,346 - 92,202,841
singlet/doubletsinglet
Overlap genenone
Upstream geneFbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh
Downstream geneLOC665805, Prickle2, LOC545866, A730049H05Rik, LOC384461
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473J14.T7 (MSMg01no473_j14.b1)MSMg01-473J14.TJ (MSMg01no473_j14.g1)
ACCAG555860AG555861
length1,751767
length of high quality
(start - end)
---500 (77 - 576)
definitionCHROMAT_FILE: MSMg01no473_j14.b1 PHD_FILE: MSMg01no473_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:44 2005CHROMAT_FILE: MSMg01no473_j14.g1 PHD_FILE: MSMg01no473_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTATATATTCTCGATCNANNACNGTTCATNGATACANACAATAACAAT
GGAGAGCCTACTATACNCACAATACAAGAGAAGTATAGGGGAACAATATA
TAAAGCTGAGACTTAATATACCTCACATCAGCATAAATAGTCGAGAACAG
TGATGTACACATGCATGTAGAGCAGCCGCGTATACATAGTAACTCGCCAT
TCTGACNGNGCATCGTAGNTGACCTGCTGCCTTTGCTTTCTCCTAGTGCA
CCCGCTCTGCTATAACGCCTACTGCGCTCACGAGAGAAGCTCAGAGATAA
TGACAGTAGAGCGAAATACAGACAGCGGAAGTATGTAAGTTAATATGGAC
GCGAGTCCTATTATATAGTAGTCCACGCAAAGAGAGATATGCGTATATGA
CATTAATATATGCGACGCGCTATGCGTCACTCTATCGCGCCGATATGTGT
GGCGAAGCNGGCGACAGCANAGTTATGCGCNCTTCGCTCGCTCTCGATGT
CCTTACACGTGCAGCTATACGATCGTGAGTGATTCTCATCGTATGGAGAT
CCAAGTGCAGCCAGCATGAAGATGAAGAGGCTGAGTGTACAGCGAGAGTC
AGCGACGCGCGATCAATACAGACATGGAAGAGCAGACGGCGCTGATATTA
CGTGCGCGCTGCGCGCATGAANCGTACGTAATACTGTCTCAATAGTGGCG
CCGTTGTACTAGTATAAGTGTCATGTGAGCTTACGCGAGCTATTATAGTA
GCGCACAGAGGATACGACACATATAGCGCAGGTAGCGAGAGCAACGTAGA
GGTAGACGTAGAGACAAGAGAAGGATGAGATGACGCAGCTTCGTGTCGAT
ACGGCGGCGTGGACAATGATCGCGATATGCGAGACGCATGNCGGTCAATG
ATGCAGATCTAGATCGGCTGTGGCCGACGCGCGGTCNGCAGTATAGACTG
AATACCGCTAACGCTATGCGAGTATTAGTGTATCTATCAGATGGCTGAGC
TCTACGACAGTGTGCCGACGCTGGTAGTCTCTCCACTATCGACTAGAGGT
CGCGTATAATGTGTCACAGAATGGAGGTATGACATGCAGGTCGAACGGAG
ACGTGNTATCTTTGCACGCGCGTCGACGATCAACGAACATCCAATGCGCT
ATCTTCGTGTCCTGTACCACACAGCGCGCTGACTACTCTATCGAGCATAC
AGTACGAGCGAGTATCGATGATAGCCGACGACATCATGTACCCTCGCAGT
ATACCTCATCGTCTCAATACTCTACGTAATATTACACGTAGATACTACTA
CTTAGCCTATTATATACGNGTATTGATGATACTATATGATACCTGGGTAT
AGCTCTACTATGCTCTCTAGCATCGTCATGTGACTGTGATAGTGTACTAT
ACATGTGACAGCGATCAGCGGNCAGATATGATCNACGAGGCTTGATAGAC
CNGCCGGCCTACTGACNTTCTATAGCATGATGTCTCGCAGCGCCGCCAGA
TCGACATGCAGCGCGACATGACGCGCTACACCTGTCTACTNTATATCTAG
CTTGTATCAGCACGAGATATGTGATAATACGATATGAGATATACATAGAA
GACACGGTCGCATGACATGAAATGATGATGCATGATAACGAGTAGATATT
CTATGCAGCGACTTATACTAACAGTGTACCGANCACGCTATGTCGATATA
GGCAGGCCCGTGCGAAGTGACGCGCTCGTGATTCATCTGATGTACGGACG
N
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGTCAGGAAGACATAGTG
AGACCCTGCCTCAAACAAAAACAGAGATAGATTTATTGCCTAGTGAGAAG
GCCTAAGGATCAACCTTGATACCAACTGGAAAGACCCACAGAGTTCCAGC
TGGGCAGCAAGGGCCTAGACTGTCTGGTCCCACTGCCATTGCTATCCCTG
CACATCTTGCCCTCGAGAACCTAGGAAGAATGGGCTCTAAGCTGAGGCAT
ATGCTCAAGAGGGAAGGTTCTTTCATTATCATTAGCCAGATGCCAGCAGG
TGGAACAGCACAGATTCACCCTAGATGTACCTACCCATGGACTCTCACAG
GATGACAGAAAGGTATGTTGGTTCTGGGGGCTCTGGGGTATAGACTGCAT
TGAAGGTCACATCAGCATCAGCTGGGCCCTTCCTCCTCCACCTCCGTCAC
CCTGACTCATGGTTCAGCGGCTCAGCATTAGCACACTCATCCCTGTTCCC
CCGTTTCCAATATTCAGGATGCAGATGCCACTTAAGCGAGGGCAAGCTCT
AATTATCTTGGAACATCAGGATCGAGTCCACTGCGTTTGACAGCAAGATA
AATACCCCCCCTTAGTCTAGTTGATTGCCAAGGTGCTTTTTATTTTGCTC
CTTTTATACAAATCTTACGCCAGTTTCCGCCCCTTTGTTATCTCTTGCAT
CATTGTTCCCCATCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_j14.g1 MSMg01no473_j14.g1 CHROMAT_FILE:
MSMg01no473_j14.g1 PHD_FILE: MSMg01no473_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:44 2005
         (500 letters)



>mm_chr6_92202097_92202992
          Length = 896

 Score =  893 bits (462), Expect = 0.0
 Identities = 489/500 (97%), Gaps = 4/500 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctagtcaggaagacatagtgagaccctgcctcaaacaaaaacagagatagatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caggctagtcaggaagacatagtgagaccctgcctcaaacaaaaacagagatagatttat 686

                                                                       
Query: 61  tgcctagtgagaaggcctaaggatcaaccttgataccaactggaaagacccacagagttc 120
           |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 685 tgcctagtgagaagacctaaggatcaactttgataccaactggaaaggcccacagagttc 626

                                                                       
Query: 121 cagctgggcagcaagggcctagactgtctggtcccactgccattgctatccctgcacatc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagctgggcagcaagggcctaaactgtctggtcccactgccattgctatccctgcacatc 566

                                                                       
Query: 181 ttgccctcgagaacctaggaagaatgggctctaagctgaggcatatgctcaagagggaag 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgccctcgagaacctaggaagagtgggctctaagctgaggcatatgctcaagagggaag 506

                                                                       
Query: 241 gttctttcattatcattagccagatgccagcaggtggaacagcacagattcaccctagat 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttctttcaaaatcattagccagatgccagcaggtggaacagcacagattcaccctagat 446

                                                                       
Query: 301 gtacctacccatggactctcacaggatgacagaaaggtatgttggttctgggggctctgg 360
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 g----tacccatggactctcacaggatgacagaaaggtatgttggttctgggggctctgg 390

                                                                       
Query: 361 ggtatagactgcattgaaggtcacatcagcatcagctgggcccttcctcctccacctccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggtatagactgcattgaaggtcacatcagcatcagctgggcccttcctcctccacctccg 330

                                                                       
Query: 421 tcaccctgactcatggttcagcggctcagcattagcacactcatccctgttcccccgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcaccctgactcatggttcagcggctcagcattagcacactcatccctgttcccccgttt 270

                               
Query: 481 ccaatattcaggatgcagat 500
           ||||||||||||||||||||
Sbjct: 269 ccaatattcaggatgcagat 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 896
Length adjustment: 10
Effective length of query: 490
Effective length of database: 886
Effective search space:   434140
Effective search space used:   434140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)