BAC Information

Click to search

BAC

Clone NameMSMg01-473P01
Chromosome6 (Build37)
Map Location 19,702,733 - 19,703,284
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473P01.T7 (MSMg01no473_p01.b1)MSMg01-473P01.TJ (MSMg01no473_p01.g1)
ACCAG556121AG556122
length778780
length of high quality
(start - end)		552 (72 - 623)554 (75 - 628)
definitionCHROMAT_FILE: MSMg01no473_p01.b1 PHD_FILE: MSMg01no473_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:13 2005CHROMAT_FILE: MSMg01no473_p01.g1 PHD_FILE: MSMg01no473_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCAGGGTTGATTTCGTTTGTACAGAAAGAACATGGTGAGTTTAAGAACT
GTGTGTAAAATATAGTGAGTGCCTCCTGCAAAACTGAAATCAGGAAAAAA
ACAGAACAGAACAAGAAATGTGAAGACAGAGTTCAAGATATTTAGAGGGT
GTACATGTGATAAGAAACACACAGATACACAAAAAATATTGTTATTCTGT
CTACTATTTCTGATAATTGCAGCTTTACACCAAGTATTTTATTTTTAATA
AAAGGAATCTGAACATTAGTTTTTTTTTATTCCATCTCTCTCCCAATACC
TTTAGACATTTGAAGTTTCAAAGGTTCAAATTTATTCTGAATTAACATAT
TAGAACATTAGACAAGATTTTTCAAGTGGAGCAGTCCTGAGAATAACAGC
TAGCTAAGAATTCCACCCTTGTAAAAGAAGAACTTATCTACTACAGTTAA
CTTAAAAGAATGAGTGTGGTCTGCATTAAATATTGCAATAAAATACACAA
CTAAAGCAACTTAAGGATGGTAGGAAGGGAGAAAGGGAGAACTGAAGGGA
GAAAGGAAGGAAGAAAGGAAGGAAGGTAGGGTAGGAAGGAACGACATGCA
TCTATCGTTCCCCCCTTTTTTTTTTTTTTTTTTCTTTTTCTTTTCCTTCC
GATACCCTCTTCTCGCTTTTATAACCATTCCCTCTTATCCTCCTCTATTC
TCTTCTCTTTCTTCTTTTTCCTTACTTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAAGAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCAGTTCCTCAGAAAACTGGACATAGTAGTACTACCTGAGGAT
CCAGCAACACCTCCTGGGCATATATCCAGAAAATGTCCCAACAAGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAATCAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAAT
TTATGAAATTCCTAGGCAAATATTTGGATCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCGCAGAAACTTAGGATACCCCAGATATAAGAGAAAATTTG
CCTAAATGCGGAAAACTCCCGAAGAACGAAGACCCAATTGTGGACCCTGT
GCCCCCTTTTTAGAAATGGGAGGAAAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_p01.b1 MSMg01no473_p01.b1 CHROMAT_FILE:
MSMg01no473_p01.b1 PHD_FILE: MSMg01no473_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:13 2005
         (552 letters)



>mm_chr6_19702594_19703545
          Length = 952

 Score = 1000 bits (517), Expect = 0.0
 Identities = 544/553 (98%), Gaps = 2/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaagaacatggtgagtttaagaactgtgtgtaaaatatagtgagtgcctcctgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acagaaagaacatggtgagtttaagaactgtgtgtaaaatatagtgagtgcctcctgcaa 632

                                                                       
Query: 61  aactgaaatcaggaaaaaaacagaacagaacaagaaatgtgaagacagagttcaagatat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 631 aactgaaatcaggaaaaaaacagaacagaacaagaaatgtgaagacagagttcaagatgt 572

                                                                       
Query: 121 ttagagggtgtacatgtgataagaaacacacagatacacaaaaaatattgttattctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttagagggtgtacatgtgataagaaacacacagatacacaaaaaatattgttattctgtc 512

                                                                       
Query: 181 tactatttctgataattgcagctttacaccaagtattttatttttaataaaaggaatctg 240
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tactagcactgataattgcagctttacaccaagtattttatttttaataaaaggaatctg 452

                                                                       
Query: 241 aacattagttttttttta-ttccatctctctcccaatacctttagacatttgaagtttca 299
           |||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aacattag-ttgtttttacctccatctctctcccaatacctttagacatttgaagtttca 393

                                                                       
Query: 300 aaggttcaaatttattctgaattaacatattagaacattagacaagatttttcaagtgga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaggttcaaatttattctgaattaacatattagaacattagacaagatttttcaagtgga 333

                                                                       
Query: 360 gcagtcctgagaataacagctagctaagaattccacccttgtaaaagaagaacttatcta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcagtcctgagaataacagctagctaagaattccacccttgtaaaagaagaacttatcta 273

                                                                       
Query: 420 ctacagttaacttaaaagaatgagtgtggtctgcattaaatattgcaataaaatacacaa 479
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctacagttaactgaaaagaatgagtgtggtctgcattaaatattgcaataaaatacacaa 213

                                                                       
Query: 480 ctaaagcaacttaaggatggtaggaagggagaaagggagaactgaagggagaaaggaagg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ctaaagcaacttaaggatggtaggaagggagaaagggagaactgaagggagaaaggaagg 153

                        
Query: 540 aagaaaggaagga 552
           |||||||||||||
Sbjct: 152 aagaaaggaagga 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |