Query= MSMg01no474_b05.b1 MSMg01no474_b05.b1 CHROMAT_FILE:
MSMg01no474_b05.b1 PHD_FILE: MSMg01no474_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:23 2005
(448 letters)
>mm_chr6_53504847_53505690
Length = 844
Score = 824 bits (426), Expect = 0.0
Identities = 441/448 (98%), Gaps = 4/448 (0%)
Strand = Plus / Plus
Query: 1 attaaacttcagttcatgcataagattgttgaaaatatatgagattatcttcaaccatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaacttcagttcatgcataagattgttgaaaatatatgagattatcttcaaccatgt 260
Query: 61 atatgcacgcacacacacacacaccacacacggtgtttgtttcacattagatttggaccc 120
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatgcacg----cacacacacaccacacacggtgtttgtttcacattagatttggaccc 316
Query: 121 catctcctaggggtgtgtatgtgtgtttcaaaaatctaaaaaaaagtcttaaaacttgag 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 317 catctcctaggggtgtgtatgtgtgtttcaaaaatctgaaaaaaagtcttaaaacttgag 376
Query: 181 atatgtctgagcccagaaatcatgggtaagtgatactcaacacttattgtcttctgataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atatgtctgagcccagaaatcatgggtaagtgatactcaacacttattgtcttctgataa 436
Query: 241 aatttcagtgtatctcataatcagtgacctcattgtagtctatgcctttgagttctacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatttcagtgtatctcataatcagtgacctcattgtagtctatgcctttgagttctacta 496
Query: 301 ggggctaagagtatgaagtctctttttcaattcactgcaatacctaccattagggatgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggggctaagagtatgaagtctctttttcaattcactgcaatacctaccattagggatgtg 556
Query: 361 tgttcccttgttcttcttgctcaccatggccaaaccttagcccatttgctttactttagt 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 tgttcccttgttcttcttgctcaccatggccaaaccttagcccgtttgctttactttagt 616
Query: 421 ggcccatgatggtgcatccctctgcgtg 448
|||||||||||||||||||||||||||
Sbjct: 617 agcccatgatggtgcatccctctgcgtg 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 844
Length adjustment: 10
Effective length of query: 438
Effective length of database: 834
Effective search space: 365292
Effective search space used: 365292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_b05.g1 MSMg01no474_b05.g1 CHROMAT_FILE:
MSMg01no474_b05.g1 PHD_FILE: MSMg01no474_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:24 2005
(388 letters)
>mm_chr6_53656909_53657696
Length = 788
Score = 652 bits (337), Expect = 0.0
Identities = 376/403 (93%), Gaps = 25/403 (6%)
Strand = Plus / Minus
Query: 1 tcctgccaagaaaggggctattcaaaagtgtgagaagttgcaattttataaacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 519 tcctgccaagaaaggggctattcaaaagtgtgagaagttgcaattttataa------aca 466
Query: 61 cacacacacacacacacacacacacacacacacacacacacctttgaaaatacccaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cacacacacacacacacacacacacacacacacacacacacctttgaaaatacccaatgg 406
Query: 121 ataggagcgctatcttccttgatggagactggaggctgactttaggagagcaacatgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ataggagcgctatcttccttgatggagactggaggctgactttaggagagcaacatgact 346
Query: 181 ggatggaaggaaggtcggaggctcgcactggggagtcggtggct------------gaac 228
|||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 345 ggatggaaggaaggtcggaggctcacactggggagtcggtggcttcgaagggagctgaac 286
Query: 229 tggaaaccagcagtggata---ttttttttgctgaaggggtgaaacctggttctgcctca 285
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 285 tggaaaccagcagtggatacagtttt----gctgaaggggtgaaacctggttctgcctca 230
Query: 286 gtgagcgtctgcggccttctcccacaccctgcttccatctctattactccatccacatga 345
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 229 gtgagcgtctgcggccttctcccacaccctgcttccacctctattactccatccacatga 170
Query: 346 ctaaggctctgaatcataaccacatgccagagaagctctctag 388
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctaaggctctgaatcataaccacatgccagagaagctctctag 127
Score = 81.9 bits (42), Expect = 6e-20
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 52 acacacacacacacacacacacacacacacacacacacacac 93
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acacacacacacacacacacacacacacacacacacacacac 107
Score = 81.9 bits (42), Expect = 6e-20
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 54 acacacacacacacacacacacacacacacacacacacacac 95
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acacacacacacacacacacacacacacacacacacacacac 107
Score = 81.9 bits (42), Expect = 6e-20
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 56 acacacacacacacacacacacacacacacacacacacacac 97
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acacacacacacacacacacacacacacacacacacacacac 107
Score = 81.9 bits (42), Expect = 6e-20
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 58 acacacacacacacacacacacacacacacacacacacacac 99
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acacacacacacacacacacacacacacacacacacacacac 107
Score = 81.9 bits (42), Expect = 6e-20
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 60 acacacacacacacacacacacacacacacacacacacacac 101
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acacacacacacacacacacacacacacacacacacacacac 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 10
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
