BAC Information

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BAC

Clone NameMSMg01-474J06
Chromosome6 (Build37)
Map Location 112,550,936 - 112,551,427
singlet/doubletsinglet
Overlap genenone
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076
Downstream geneEG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474J06.T7 (MSMg01no474_j06.b1)MSMg01-474J06.TJ (MSMg01no474_j06.g1)
ACCAG556608AG556609
length737852
length of high quality
(start - end)		495 (47 - 541)---
definitionCHROMAT_FILE: MSMg01no474_j06.b1 PHD_FILE: MSMg01no474_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:05 2005CHROMAT_FILE: MSMg01no474_j06.g1 PHD_FILE: MSMg01no474_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTACTCTTACCTACTTCTTTGAGTGTCACCAACTTGAGGAAGC
TGCCTTGTACCTTCAAGTAGTCATCTGTTCTTGACGTCTTCCCTTCTATA
GAATTATACTGTCCAAGGCACTCCTTTGCCTACTTGTTCAGTATTTGGGT
TTGCCATTACCTGAATGGAGCTCTGTGCTTGACAGGTCTATGATAGTATT
TGGTACCCAGTAACATTCAGAACCAATTCGTTGAAAGGCACATGAGGTCT
GAGTCCAGAGACCTGAGCTGTGTGGCACTCACCTTTGTGTTCCCAGTGCT
CTGCATAGTATCTGAGCCGAGGGAGAGTCAAAGCAATGTGGAAGGAGGCC
TTGCAGAAGAAGCAAGGAGATCTTAGGTCAGGGCTCTTTGGAGAGTTTTC
TTCTTTTTCTCAGTTTCTGTCTTTCTATACGTGAATGACTGGTTCCACAG
AATGGAAATAATACAATTATACCTGTGTGTGAACCACTCCAATCGCAGAT
TGGTGTCTGCTTTAAGTGCATAGCTGTGTGTCCTCACTTACGCTTTTGAT
GATCTTTGTTGTAAACCTATAAACTCTGACTGCATTTCCGGCTCTATGCA
ATTCCGTAATTTGCCAAAATTTACATGCCCCCCCCCACTTAAAACTTTCC
AATACCATTATGGAATAACCTAAATTTTATTTGTATN

CCAACCCCCGAACCGACCCACCACACCCAAAACCAAAACCCCAACACCAC
CCCCCCCCAAAAAAACACCAAAAAAACCAAACACCCAAAACACACAGCAC
AACCGACACCCACCCACACGAAACAAAAAACGACACAAAAACGAAACGCG
ACGACAAACGCACGCGCCGCCGACACGAAAAAACANCCGACACCAAACCA
CAACAAACAAAAAAACAACCCACCACCACCACCACACAAAACACCAAAAA
CAACAAACAAACCAAACACAAACAAAAACAAAAGAGAAAACACCACACAC
AACACCCAAACACACCCAAAACCCCCAAAAAACACACCAAAACCACCCGC
AAACAACCCCAAAACCAACAAAACCCCCCAAACGCCCACACAACAAAACA
CAAAAAAACAAACACCCCAAACCCGCACACAACCAAACCCCAAAACCCCA
CACCCCCAACAACCACACAAACCCAAAAACCCAAACACCACAACCCCCCA
CCCCACACAACAAACCCCACAACAACACCACACACCAACCAACAAACGAC
CAAAGCCCAAAAACACCAAACACCCAAACACCCCAAACCCACCAACACAA
AAACCCCCCAACCCCCCAACCCACACCAAACCCCCAAAACANCCAAACCC
CACAAAAACCAACACNAAACAAAAANNCCACACCCCGNGCGNGCNAACCG
AACCCAGGCCGGGCGGGGGGNNAGGAGGGANCCAGAAGAAGCCAGAACCC
CCGGNNCCCGGNGGGNNNGNGNGNCCCGNNNNNGAAGGGGGGGGGGGGGG
GGNAANCCNNNCNACNNAAGCCNNACNNGNNNANNNNNNNCCANGNAACN
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_j06.b1 MSMg01no474_j06.b1 CHROMAT_FILE:
MSMg01no474_j06.b1 PHD_FILE: MSMg01no474_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:05 2005
         (495 letters)



>mm_chr6_112550733_112551627
          Length = 895

 Score =  905 bits (468), Expect = 0.0
 Identities = 486/492 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtactcttacctacttctttgagtgtcaccaacttgaggaagctgccttgta 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggaattctgtactcctagctacttctttgagtgtcaccaacttgaggaagctgccttgta 636

                                                                       
Query: 64  ccttcaagtagtcatctgttcttgacgtcttcccttctatagaattatactgtccaaggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ccttcaagtagtcatctgttcttgacgtcttcccttctatagaattatactgtccaaggc 576

                                                                       
Query: 124 actcctttgcctacttgttcagtatttgggtttgccattacctgaatggagctctgtgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 actcctttgcctacttgttcagtatttgggtttgccattacctgaatggagctctgtgct 516

                                                                       
Query: 184 tgacaggtctatgatagtatttggtacccagtaacattcagaaccaattcgttgaaaggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 515 tgacaggtctatgatagtatttggtacccagtaacattcagaaccaatttgttgaaagac 456

                                                                       
Query: 244 acatgaggtctgagtccagagacctgagctgtgtggcactcacctttgtgttcccagtgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 acatgaggtctgagtccagagacctgagctgtgtggcactcacctttgtgttcccagtgc 396

                                                                       
Query: 304 tctgcatagtatctgagccgagggagagtcaaagcaatgtggaaggaggccttgcagaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tctgcatagtatctgagccgagggagagtcaaagcaatgtggaaggaggccttgcagaag 336

                                                                       
Query: 364 aagcaaggagatcttaggtcagggctctttggagagttttcttctttttctcagtttctg 423
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 335 aagcaaggagatcttaggtcagggctctttggagagttttcttccttttctcagtttctg 276

                                                                       
Query: 424 tctttctatacgtgaatgactggttccacagaatggaaataatacaattatacctgtgtg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctttctatacgtgaatgactggttccacagaatggaaataatacaattatacctgtgtg 216

                       
Query: 484 tgaaccactcca 495
           ||| ||||||||
Sbjct: 215 tgagccactcca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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