NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCG
GAATTCAGACGATAACAGAAAGCAGATCTCTGAGATCAAGGTCAGTTTAC
AGGACAGCCAAGCTTAATCAGTCAAGAAGTTGGAAAACAAAGCTGGTGAT
AATAAAAGGAGTGCATGTTCCAGCTCCAGTAAGCAGCAGAACTTGGCAGG
TTCAGTCATATGGCTCTGGATTTAGAGTCAAGAATAGAAGGGACTACTGT
TATAACTAATGCTGGTTAGTTGGAGCTAAGAAATTAGCAGTGATTAAGAA
GAGACCAGCATCTCTGAGGTGATATCTCTGGGAAGTATTTTCTGAGAGCA
TAAAGATGCTGTGTTCAAGATAGCCAAGGGTCTATCATGTTCTGCAGCTG
GACTTGGTAATGTGTAAGAATCATCCAGGTGGTACTGGTTTTGAAGGCAT
TAAATGGTCATCGAGAACATGAGGCTTGGCACTGTTAGAGGACAGGAAAG
GCCATTTGTGAAGATGCAACCCCAGTTGCAGTTGATGGCCCAGAACTACA
GGGTTGATGCAAAGAAGTTGAGGCTTGGCATGTGAAGGGAGTCTAAGTGA
AGCCATTGGTGAAGCTTAGTTGCAGTGAATGACTGCAACAAATTGTATCT
GCCAATACCATGGGATGATCACCCTGAGGAGTATCAACAGTGGAGTGAAT
TCCACGAGAGCCTACCGTTCTACAGAGA

NACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGCGCAATTCTGTGCACATTCTTGTATTACTGCTG
TTTTGAAAATTGTCTCATGTGGCGGCATAGTTATCTCTATTTCAAAAGTG
TTTCCAGAAAATTAAAAGTAGCAAAATACGATTGAAATTATTCAGGCCCA
GTGGCACAGCCTATAACTACTTCTCCTTGGGATGCTGAAAGATGGATATT
ACAAATTCAAGGTCAGTCTGGGGTATATAATGAGCTCAAGGTAGCCTTGG
AAACTTAGACCCTTTCTTTTAATTAAAGATAAAAAGGAAGGCTGGAGAAG
TAGCTTGGTTGTCAAGCACTTCTCTGGCATATACAAAGTGTCAGGTTCAA
ACCATAGTGCTCAAAATAAAATATTAAAATCAACTGGTATAAATAACAGT
GGCATTTTTCTAACCCTATTTATGTTCCAGGACATAAGTTGGACTTTTCA
TACAATTTATTTCATCGAAACCCTAAACTGCTGTTACATTGTAATTACTA
CTATTTTATTATCTAAAAATGAGGAAACACTGCAAGCACAATTACTGCAT
TTGATTGAGCTATCAAAAAAAAAAGAAATGCTTAAAATAAATTAACTTCT
TATGCTCTAAAGCCAGGCCCACATCAGAATAGTGCAAACAGATATTATTT
TCCCCTTTTAGAAAGACAACAATGTGAATTGAGG

Query= MSMg01no474_k17.g1 MSMg01no474_k17.g1 CHROMAT_FILE:
MSMg01no474_k17.g1 PHD_FILE: MSMg01no474_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:12 2005
         (540 letters)



>mm_chr6_102679429_102680365
          Length = 937

 Score =  969 bits (501), Expect = 0.0
 Identities = 530/543 (97%), Gaps = 8/543 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatagttatctctatttcaaaagtgtttccagaaaattaaaagtagcaaaatacgattg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 200 gcatagttatctctatttcaaaagtgtttccagaaaattaaaagtagcaaaatatgattg 259

                                                                       
Query: 61  aaattattcaggcccagtggcacagcctataactacttctccttgggatgctgaaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaattattcaggcccagtggcacagcctataactacttctccttgggatgctgaaagatg 319

                                                                       
Query: 121 gatattacaaattcaaggtcagtctggggtatataatgagctcaaggtagccttggaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatattacaaattcaaggtcagtctggggtatataatgagctcaaggtagccttggaaac 379

                                                                       
Query: 181 ttagaccctttcttttaattaaa---gataaaaaggaaggctggagaagtagcttggttg 237
           ||||||||||||||| ||  |||   ||||||||||||||||||||||||||||||||||
Sbjct: 380 ttagaccctttctttaaa--aaaaaagataaaaaggaaggctggagaagtagcttggttg 437

                                                                       
Query: 238 tcaagcacttctctggcatatacaaagtgtcaggttcaaaccatagtgctcaaaataaaa 297
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcaagcacttgtctggcatatacaaagtgtcaggttcaaaccatagtgctcaaaataaaa 497

                                                                       
Query: 298 tattaaaatcaactggtataaataacagtggcatttttctaaccctatttatgttccagg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tattaaaatcaactggtataaataacagtggcatttttctaaccctatttatgttccagg 557

                                                                       
Query: 358 acataagttggacttttcatacaatttatttcatcgaaaccctaaactgctgttacattg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acataagttggacttttcatacaatttatttcatcgaaaccctaaactgctgttacattg 617

                                                                       
Query: 418 taattactactattttattatctaaaaatgaggaaacactgcaagcacaattactgcatt 477
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taattactactattttactatctaaaaatgaggaaacactgcaagcacaattactgcatt 677

                                                                       
Query: 478 tgattgagctatcaaaaaaaaaagaaatgcttaaaataaattaacttcttatgctctaaa 537
           ||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||
Sbjct: 678 tgattgagctatcaaaaaaa---gaaatgcttaaaataaattaacttcttaggctctaaa 734

              
Query: 538 gcc 540
           |||
Sbjct: 735 gcc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 937
Length adjustment: 10
Effective length of query: 530
Effective length of database: 927
Effective search space:   491310
Effective search space used:   491310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)