BAC Information

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BAC

Clone NameMSMg01-475K13
Chromosome6 (Build37)
Map Location 109,945,243 - 109,945,525
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475K13.T7 (MSMg01no475_k13.b1)MSMg01-475K13.TJ (MSMg01no475_k13.g1)
ACCAG557433AG557434
length758745
length of high quality
(start - end)
283 (335 - 617)403 (102 - 504)
definitionCHROMAT_FILE: MSMg01no475_k13.b1 PHD_FILE: MSMg01no475_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:31 2005CHROMAT_FILE: MSMg01no475_k13.g1 PHD_FILE: MSMg01no475_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACATGC
GCGGAATTCTTTATTTTTACCAGAAAGAACTTTCTGGTGGGAAGTTTAGG
AATGGTGTTCTTGTAGGTCAAATGAAACCAAAAATTCTTAATTGTTTATT
ATCCACCATACCTACTATAGCAGAGAGGTGGAAGTGACTCTACACAAATC
ACACAAGAAAAACATCAAAGGTACTTCAAATTCCCAAATAGTCAATTTTT
TCAAATGTGTTTTCATTTTGGAAGAGAGAACCTCAATTGAGACAATGCAT
TGATCAGATTGCCCTTTAGACATGTTTTATGNCTTCTCATATCTTTTGTT
GCCATTGAGCACCTCTATTAGTTAATAAAAAGAGTAACAATGGGTTCTCT
TCTAGGGTATCTAACCTCACCAACTGTGGGCTTTTATAAATGTAACTTAT
ATTTGTCTGAAGACAATAGTTATCCATGGGCCTGACTACCTCATTCATAC
AACATAGGCCTAGTCCAGGAAGCTTCTAGACTCCACACAGTCTACTCCAG
GCCTAAGATGTTTTCAGCTTCTGAAATTTACTTCTGCATAAGCTCACTCT
TTCTAGNTCTTTCTAAGCTCTGTTTGTCTGGCCCATCATCTGCTCTGGCC
AATACTCCTCTTTTTTTTGACTGATTCAACCTGCCTTCTTTCTGTACCTC
TGATTGAATTGTCTCTGCCTGGCTTCCACCCAATTATAGCCATGTTCTCT
AATTTTCT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATCAATTGAAGACCACATGAATAAACCTACAC
ACCTAGGCATAGTTGACTTTTTAAAAAGAAGCCAAACCACAGAATGGGAA
AGAGAAAACATCTTCATCAAATGATGCTGGCTTAACTGGAGGTCTGAATG
TAGAGGAATACAAATGGAACCGTATTTATCACCCTGCACAAAACTCAAGT
CCAGATGGATCGAAGTTCTCAACTTAAAACTGGTCACACTGAATCTAATA
GGAGGAGGAAGTGGTGAATGGCCTTGAATGCATTTTAGAGAAGACAACTT
CCTGAACAGAACACCAATAGCTAAAATACTCCAATCAACTAACAAATAGG
ACATCATGAAACTGAAAAACTTCTGTAAGACTAAGGATAACTTCAATAAT
ATAAAACCAGAAAGCTACAAATTGGGAAAATATCTTCACCAACCCTACAT
CTGGCAGAGATCTAATATCCGCAATAAAGAAAGAACTCAAGAGCTAGACT
TCCCAGAAACCAAATAACTCAATTACAAAGTGGGGTACACCGTTTACGTA
AAGGATTCTTCATTAGTAGAAACCTCCCGCGGCCTGACAACCCCCTCCCT
GCCACGTCCCGTGTTATGTACCCCTCACGGCCTCCCAAAACCCCTAATTT
CCTTCCTGTGACTTCTCTATTTCATTATCTGTTCCAAAAACTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_k13.b1 MSMg01no475_k13.b1 CHROMAT_FILE:
MSMg01no475_k13.b1 PHD_FILE: MSMg01no475_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:31 2005
         (283 letters)



>mm_chr6_109945043_109945725
          Length = 683

 Score =  542 bits (280), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcatatcttttgttgccattgagcacctctattagttaataaaaagagtaacaatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcatatcttttgttgccattgagcacctctattagttaataaaaagagtaacaatggg 260

                                                                       
Query: 61  ttctcttctagggtatctaacctcaccaactgtgggcttttataaatgtaacttatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcttctagggtatctaacctcaccaactgtgggcttttataaatgtaacttatattt 320

                                                                       
Query: 121 gtctgaagacaatagttatccatgggcctgactacctcattcatacaacataggcctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgaagacaatagttatccatgggcctgactacctcattcatacaacataggcctagt 380

                                                                       
Query: 181 ccaggaagcttctagactccacacagtctactccaggcctaagatgttttcagcttctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggaagcttctagactccacacagtctactccaggcctaagatgttttcagcttctga 440

                                                      
Query: 241 aatttacttctgcataagctcactctttctagntctttctaag 283
           |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aatttacttctgcataagctcactctttctagttctttctaag 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)