BAC Information

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BAC

Clone NameMSMg01-476J10
Chromosome6 (Build37)
Map Location 14,775,047 - 14,904,000
singlet/doubletdoublet
Overlap geneFoxp2, LOC100040568
Upstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797, Ppp1r3a
Downstream geneMdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476J10.T7 (MSMg01no476_j10.b1)MSMg01-476J10.TJ (MSMg01no476_j10.g1)
ACCAG558143AG558144
length762706
length of high quality
(start - end)
546 (72 - 617)150 (80 - 229)
definitionCHROMAT_FILE: MSMg01no476_j10.b1 PHD_FILE: MSMg01no476_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:44 2005CHROMAT_FILE: MSMg01no476_j10.g1 PHD_FILE: MSMg01no476_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,775,047 - 14,775,592)(14,903,851 - 14,904,000)
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAGGATCCGCGG
AATTCAGCTTTTCCCTTGATGAGTCCACTGCAGTGCAAATGTACAGATAT
GTCAAATTGATCTTCTGTCATTATCTGCATGTTTAGAGAGTTTCTAAAAA
CAAAACACAATGAATTATCAATAAGTTTTGTATATGATATACATCCTATA
CAAAAAAATCAGTAAGGGAAAAAAATTAAATCTTAATTTCAATGTCAGCA
TGTTGTACCAAGCCATCCTTTATTTTAACACCATCTATCATATACTTCCT
GACAGTGACATTCTTCTTTTTCCTGAGAGAAACAGACACATAGAAAAGTA
TTGAAATAGTGTAGAAAATAGGATAGGATTTTCCTCTTTTGATATGCCAG
ATCATTAAATCAAAATTAATCCATGCACTATGAGTTTTAATCAATATACG
ACTCTCCCAAACAGAAGAGATTTATTTAAATCTTTCTGTCATGTCAAACA
GTGTTCATGCCAAACACAGATTCTTCTCTCAAATGTTAGAGCTACTATCG
GGTAAATGAAAGACAGCTTAGCTGAAGGAATTAAAATTTCAAATATACCT
TAATTGAACTTATAGATAAGTACACAGCTCATTAGTGCTCAAAGATGCAC
ATGTTCATATATGTTAAAAACCCCAATGCATGCCTAATAAAATACTTCAT
TGTTGTAAGAATTTTATAACCTAATTACAATAACTTAACTTTTATGGAGC
AATTATTTTATN
TTCACCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTACAGCGACATTCCTATAAAAGCCAGACATGT
ATTGCATGTTTCTAGTCACAGAACTCCTATAGGGAGATGGAAAGCTGAGG
CAGGAAAATCACCAGAAGCTACCAGTAGCTTAGATCTTGTATGAGCTAGC
CTGGTATGTGGCATATGCCACAGAAAGAAGGGAATCCAAAGTGGACAGGT
GGGAGATATTAGCGGGAAGGAATGGGACTGAAACCCGTCCCATCATGTCG
AAAGCCAAACCCAGTTTTCATGCTTTCCCCTGACCCATAAAAAATTTTTG
GTGGGTAACTCTTTAAACACGGGGGGAATTCACCCTTTACCCCCCCCTTT
TTCTCCTCCCGAAAATTTATTTACGTGGCGGGGCGAATAAAAAAACAATA
AAAACGGTTTTTTCCCCACTATCTCCCCCCCCTCCATTTTCCTCCTCCCT
TTCACTCTTTCTTTTTTTCCCTCTTTCTCCTTTTCCTTCTTCTTACACAT
TCTCCCCCCTCTTCCCCTCCTATATCCCTTCTTCCTTTTCTCCCCATATT
TATTTTTTCCCCCTCCTTTCTTTTTTTTTTCTTTTTTTTTTCCCTCTTTT
CCCTCTCTTCCTCCCTTTTTCTCTTTCTCCCCTTTCCCCCCCTTTTCTCC
CTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_j10.b1 MSMg01no476_j10.b1 CHROMAT_FILE:
MSMg01no476_j10.b1 PHD_FILE: MSMg01no476_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:44 2005
         (546 letters)



>mm_chr6_14774847_14775792
          Length = 946

 Score = 1025 bits (530), Expect = 0.0
 Identities = 542/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccactgcagtgcaaatgtacagatatgtcaaattgatcttctgtcattatctgcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccactgcagtgcaaatgtacagatatgtcaaattgatcttctgtcattatctgcatg 260

                                                                       
Query: 61  tttagagagtttctaaaaacaaaacacaatgaattatcaataagttttgtatatgatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagagagtttctaaaaacaaaacacaatgaattatcaataagttttgtatatgatata 320

                                                                       
Query: 121 catcctatacaaaaaaatcagtaagggaaaaaaattaaatcttaatttcaatgtcagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 catcctatacaaaaaaatcagtaagggaaaaaaattaaatcttaatttcaatgtcagcag 380

                                                                       
Query: 181 gttgtaccaagccatcctttattttaacaccatctatcatatacttcctgacagtgacat 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gttgtaccaagccatcctttattttaacagcatctatcatatacttcctgacagtgacat 440

                                                                       
Query: 241 tcttctttttcctgagagaaacagacacatagaaaagtattgaaatagtgtagaaaatag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctttctcctgagagaaacagacacatagaaaagtattgaaatagtgtagaaaatag 500

                                                                       
Query: 301 gataggattttcctcttttgatatgccagatcattaaatcaaaattaatccatgcactat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataggattttcctcttttgatatgccagatcattaaatcaaaattaatccatgcactat 560

                                                                       
Query: 361 gagttttaatcaatatacgactctcccaaacagaagagatttatttaaatctttctgtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagttttaatcaatatacgactctcccaaacagaagagatttatttaaatctttctgtca 620

                                                                       
Query: 421 tgtcaaacagtgttcatgccaaacacagattcttctctcaaatgttagagctactatcgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtcaaacagtgttcatgccaaacacagattcttctctcaaatgttagagctactatcgg 680

                                                                       
Query: 481 gtaaatgaaagacagcttagctgaaggaattaaaatttcaaatataccttaattgaactt 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaatgaaagacagcttagctgaaggtattaaaatttcaaatataccttaattgaactt 740

                 
Query: 541 atagat 546
           ||||||
Sbjct: 741 atagat 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no476_j10.g1 MSMg01no476_j10.g1 CHROMAT_FILE:
MSMg01no476_j10.g1 PHD_FILE: MSMg01no476_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:44 2005
         (150 letters)



>mm_chr6_14903651_14904200
          Length = 550

 Score =  282 bits (146), Expect = 5e-81
 Identities = 149/150 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctataaaagccagacatgtattgcatgtttctagtcacagaactcctatagggagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcctataaaagccagacatgtattgcatgtttctagtcacagaactcctatagggagatg 291

                                                                       
Query: 61  gaaagctgaggcaggaaaatcaccagaagctaccagtagcttagatcttgtatgagctag 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 290 gaaagctgaggcaggaaaatcaccagaagctactagtagcttagatcttgtatgagctag 231

                                         
Query: 121 cctggtatgtggcatatgccacagaaagaa 150
           ||||||||||||||||||||||||||||||
Sbjct: 230 cctggtatgtggcatatgccacagaaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)