Query= MSMg01no478_b01.b1 MSMg01no478_b01.b1 CHROMAT_FILE:
MSMg01no478_b01.b1 PHD_FILE: MSMg01no478_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:41 2005
(193 letters)
>mm_chr6_112245786_112246378
Length = 593
Score = 364 bits (188), Expect = e-105
Identities = 193/196 (98%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 1 cacatctctaggtaccctcccttggtctgcttctacaggaggtctgcctgaggaagaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cacatctctaggtaccctcccttggtctgcttctacaggaggtctgcctgaggaagaact 263
Query: 61 gagcagttcttcagaaaagagcaactccatgcttacaatataagcagtgtgctgtgatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagcagttcttcagaaaagagcaactccatgcttacaatataagcagtgtgctgtgatgg 203
Query: 121 cttcatcatcaccaccac---catcatcatcatcatcatctggggtggctgctgctgctg 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cttcatcatcaccaccaccatcatcatcatcatcatcatctggggtggctgctgctgctg 143
Query: 178 ctgctgctgctgctgc 193
||||||||||||||||
Sbjct: 142 ctgctgctgctgctgc 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space: 108225
Effective search space used: 108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no478_b01.g1 MSMg01no478_b01.g1 CHROMAT_FILE:
MSMg01no478_b01.g1 PHD_FILE: MSMg01no478_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:41 2005
(650 letters)
>mm_chr6_112064086_112065133
Length = 1048
Score = 1210 bits (626), Expect = 0.0
Identities = 644/650 (99%), Gaps = 2/650 (0%)
Strand = Plus / Plus
Query: 1 actggaagccacagagagtggaaaagtttcaaagaataacaaaggctatttctcacataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaagccacagagagtggaaaagtttcaaagaataacaaaggctatttctcacataa 260
Query: 61 tcacaggctgaaatgaaggccatgttggcaagacaaagagacccgtttaaaagagagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaggctgaaatgaaggccatgttggcaagacaaagagacccgtttaaaagagagaac 320
Query: 121 caaagcaagctactggaggggaatctattctgttaatatcacaaagataccatgcaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagcaagctactggaggggaatctattctgttaatatcacaaagataccatgcaattg 380
Query: 181 tccagcctgattttgtgaaacaaagattagtgactgcagaccaggagaagacagttgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagcctgattttgtgaaacaaagattagtgactgcagaccaggagaagacagttgaat 440
Query: 241 tgtttgtgttaaatgttgtctctgcactgcagagcaaattctgataggataggaaagtca 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tgtttgtgttaaatgttgtctctgcactgcagagcaaattctgataagataggaaagtca 500
Query: 301 gttcaaaaatgctcaagccacttttgacctttggcagaaatatacccattatataccccc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcaaaaatgctcaagccacttttgacctttggcagaaatatacccattatatacccc- 559
Query: 361 acatctatataaaagcagtaaatttttgtaaacatcagaaaagcatctttaaaaaaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acatctatataaaagcagtaaatttttgtaaacatcagaaaagcatctttaaaaaaaatg 619
Query: 421 aggaaaccgattctctcagacaaaattagttgtgatttttttcaaataacatttttctag 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 aggaaaccgattctctcagacaaaattagttgtgatttttttcaaataacttttttctag 679
Query: 481 aaaaaaaatatttttagaagggttttcatctttacagtacctcatgctttaattctattt 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaaaa-tatttttagaagggttttcatctttacagtacctcatgctttaattctattt 738
Query: 541 atcattattgtgtattgagagtgcaggtgtgccttgccacaagtgtcacaggacaagtct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atcattattgtgtattgagagtgcaggtgtgccttgccacaagtgtcacaggacaagtct 798
Query: 601 caggttttggttccacatggagttcggggatccagctcacgtcatcaggg 650
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 799 caggttttggttccacatggagttcggggatccaattcacgtcatcaggg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1048
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1038
Effective search space: 664320
Effective search space used: 664320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
