Query= MSMg01no478_i02.b1 MSMg01no478_i02.b1 CHROMAT_FILE:
MSMg01no478_i02.b1 PHD_FILE: MSMg01no478_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:14 2005
(647 letters)
>mm_chr6_35390941_35391987
Length = 1047
Score = 1139 bits (589), Expect = 0.0
Identities = 600/604 (99%)
Strand = Plus / Minus
Query: 44 tatctcagactctgtagattgggactattataaagctagtcactttttgtcataccagct 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 tatctcagactctgtagattgggactattataaagctagtcactttttgtcataccagct 988
Query: 104 gcggttgtacacaacaccagtaacctcagcactcacgaggctgatgcaggaggaactata 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 gcggttgtacacaacaccagtaacctcagcactcacgaggctgatgcaggaggaactata 928
Query: 164 ttggtatgctaatctagactatacatcatgagtttaagaccagcctgggcaacttagtga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ttggtatgctaatctagactatacatcatgagtttaagaccagcctgggcaacttagtga 868
Query: 224 gaccctgtccaaaaccaaaaggtttttctctaaatagagaatctagatgtttatttttgg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaccctgtccaaaaccaaaaggtttttctctaaatagagaatctagatgtttatttttgg 808
Query: 284 actttccttgccttcctttgtcatgccaatcccttctttttttctgtatacgttcactct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 actttccttgccttcctttgtcatgccaatcccttctttttttctgtatacgttcactct 748
Query: 344 cttcttctcccaacggactgggaaatgttaatctagattagatctcttcctatcagagag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cttcttctcccaacggactgggaaatgttaatctagattagatctcttcctatcagagag 688
Query: 404 aactcgttagccctttggccctctaccactgttgggttgcatagcattaaactgaactgg 463
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 687 aactcgttagccctttggccctctaccactgttgggttgcataggattaaactgaactgg 628
Query: 464 aaatgtcttcagaattctatcacaggaacaactcagaccaattcagaagagaattttccc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaatgtcttcagaattctatcacaggaacaactcagaccaattcagaagagaattttccc 568
Query: 524 taatggtatttcaataaagttttcacctctcagatcagatagaanatatcttgctaagag 583
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 567 taatggtatttcaataaagttttcacctctcagatcagatagaaaatagcttgctaagag 508
Query: 584 gggagctcaggcaaatctctgcttgtgcatgatgtcctagaattgatagaatatgtatat 643
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 gggagctcaggcaaatctctgcttgtgcataatgtcctagaattgatagaatatgtatat 448
Query: 644 ttta 647
||||
Sbjct: 447 ttta 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_i02.g1 MSMg01no478_i02.g1 CHROMAT_FILE:
MSMg01no478_i02.g1 PHD_FILE: MSMg01no478_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:14 2005
(605 letters)
>mm_chr6_35220799_35221803
Length = 1005
Score = 1114 bits (576), Expect = 0.0
Identities = 599/610 (98%), Gaps = 9/610 (1%)
Strand = Plus / Plus
Query: 1 aggacagccagggctacatgggagaaaccctggtcttgaaaagccaaccaaaaaaaaaaa 60
||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 200 aggacagccagggctacatgg-agaaaccctg-tcttgaaaagccaa--aaaaaaaaaaa 255
Query: 61 aaaaaaaaa-----gtctccagtgctgacttgcagggtgacagaggaggcagatagggac 115
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaaaaaaaaaaaaagtctccagtgctgacttgcagggtgacagaggaggcagatagggac 315
Query: 116 atctgagctgagagccaagggtagacatgtgagctggtattccagggagcaggaaggatt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atctgagctgagagccaagggtagacatgtgagctggtattccagggagcaggaaggatt 375
Query: 176 cttctgtaggagattggtaagggccttcatgtcctgtttccaggcgcagcaccaagtaca 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttctgtaggagattggtaagggccttcatgtcctgtttccaggcgcagcaccaagtaca 435
Query: 236 ttactctggggtttttgtcaacaggctaagatctggcttactttgcccattactgactgg 295
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttactctgggggctttgtcaacaggctaagatctggcttactttgcccattactgactgg 495
Query: 296 tctgaggccatggagtcaggccaatgattggaggtggtaactgttgtatatttgtcttcc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tctgaggccatggagtcaggccaatgattggaggtggtaactgttgtatatttgtcttcc 555
Query: 356 tgagatggcttcattatgcagcccaggctacccacagataaattaattctgctttctctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgagatggcttcattatgcagcccaggctacccacagataaattaattctgctttctctt 615
Query: 416 tttgaaaagtatttctaaacccttgacataattttattttcctaatcgccatttgaggac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttgaaaagtatttctaaacccttgacataattttattttcctaatcgccatttgaggac 675
Query: 476 aattcactctttaaactttgggcggaacaccaaccactgaaaggggtgctcagcgagaga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aattcactctttaaactttgggcggaacaccaaccactgaaaggggtgctcagcgagaga 735
Query: 536 ggaatagctacagaaaccatttcctggaccaagcttggggccctacctggccatctgcca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggaatagctacagaaaccatttcctggaccaagcttggggccctacctggccatctgcca 795
Query: 596 gtcttatcca 605
||||||||||
Sbjct: 796 gtcttatcca 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
