BAC Information

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BAC

Clone NameMSMg01-478M09
Chromosome6 (Build37)
Map Location 115,689,002 - 115,689,619
singlet/doubletsinglet
Overlap geneTmem40
Upstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik
Downstream geneEG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478M09.T7 (MSMg01no478_m09.b1)MSMg01-478M09.TJ (MSMg01no478_m09.g1)
ACCAG559810AG559811
length752731
length of high quality
(start - end)
191 (115 - 305)631 (77 - 707)
definitionCHROMAT_FILE: MSMg01no478_m09.b1 PHD_FILE: MSMg01no478_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:34 2005CHROMAT_FILE: MSMg01no478_m09.g1 PHD_FILE: MSMg01no478_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGCGGGCGCAAAACGACGCAAATTTCGTAGCCCGTGGGNGGNAANCANC
NGTAGCGTTACTCGCTGAGAGNACNAATCTGAAATGCTTGGCCACCGAAG
CAGTCTGTGTTCCAGGCACTTATAGGATGAGGTCTGCAGTGAGAATTCTG
AATTAGTGCTTTCATTTTAACCCCAGATAGGAGGATATAGGGCTGCTTCA
GACTGTCCACAGCAGCTGACTATGATTTGCCTCATGCTCTATTTGAAGTG
TGGTTTTGCCAACTACATATAGTTTCTGCAGTTGTGTGACATATGGAATT
CTGGTTTTTTTTTTTTGGGCANANAAANACNAGAACCCCAAGAAAAGGAG
TTGGCGGCCAACAGCCGCAGCCGAGCGGGNAGGGAGGGCCGGCCCCCCCC
CCCCCCCCCCCCGGGGGGAGAGGCGGGGCGCGGGCCCGCCCGGGGGCAGG
CAAACAGCGCAAAGCAGCGGGCGGGAACCAGGGCGGCGCGGCGACCGAGG
CGGGGGCCGAAAAAAACCACGGGGCAGGCGGGCACAGCGGCGAGAGCCCC
CGGCAGAAGAAGCACGACCGGGGCGGAGGGGGAAGGAAGACACCGACAAA
CCCACGCGAGAGGGAGGAAGGACCCCGCCCAAAAAGGGGACGACCGCCCT
TCGTGCGGGAAGAAAGGGACCGGGCGCGGAGAAAAGAGCCGGCCGGGCGA
AGAGAAACGCGACCCCNAGCCCCGGGGGAGCCACCACGCACCCCCCCGAG
AA
TGTGTGAGGCCTGGAGGCCGCCTGGTCAAAACGGGGAGGTGACACTATAG
AATTACAAAAAGAGGTCTTTGNCCACCAACTAGTCTAAGACGTGCACAAC
TCAACCAAGCTTTACCCCCTCCAGGCTTCTGCTCCAGACTAGGCAACCTA
GGGCAATGGATGACGTGGGCTGTGACCTTCAGGAGCATAGGTGGCTGGAC
AGACACACATCACCCAGCCATCATGGCGACTGACTCAAGGCAGGGAGGAC
AAAGTCAATGAGGGCTTAAGCAATATGATTAGGGTTTCTATAGGACATGT
GACATCATTTTTTTGTCACAATCAAGGAGACAAGTTGGAAAGACATTCCA
GGCAAGTAGAACACATGTCAGACACCCAGGGTCATATGATGTCATGAGGA
CAGAGATGATACAGCATTGTGGACTCCGTAATATGGTGTGTCATTGAACT
CGGTTGCCTCCTCAGGAAAGCCTCTCTAGGCAGCAGCAGAGGTAGGGCTC
AGTCACAAAACACAGAAAGGACAGAAAGTTCAAGGCCACTGTCATAACCC
GCAAGCCAGGCAGAGCTCCTTCCTCCATAGTGTGGGAAGACTGAGAATAT
CCACCAGAGCCATGGCGGTTGTGGCTCCTTCCAACTGAAGCCCTACAGCT
TGTGTTTGCTCCTCACAGACAGCAGCGATGAGGACCAGCCCTCCAGAGGT
CCCAGGATACACAGAAGGAGGCCCTGCAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_m09.g1 MSMg01no478_m09.g1 CHROMAT_FILE:
MSMg01no478_m09.g1 PHD_FILE: MSMg01no478_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:34 2005
         (631 letters)



>mm_chr6_115688691_115689721
          Length = 1031

 Score = 1071 bits (554), Expect = 0.0
 Identities = 605/628 (96%), Gaps = 10/628 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctagtctaagacgtgcacaactcaaccaagctttaccccctccaggcttctgctccagac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ctagtctaagacgtgcacaactcaaccaagctttaccccctccaggcttctgctccagac 870

                                                                       
Query: 64  taggcaacctagggcaatggatgacgtgggctgtgaccttcaggagcataggtggctgga 123
           |||||||||||||||||||||||| |||||||||||||          ||||||||||||
Sbjct: 869 taggcaacctagggcaatggatgatgtgggctgtgacc----------taggtggctgga 820

                                                                       
Query: 124 cagacacacatcacccagccatcatggcgactgactcaaggcagggaggacaaagtcaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cagacacacatcacccagccatcatggcgactgactcaaggcagggaggacaaagtcaat 760

                                                                       
Query: 184 gagggcttaagcaatatgattagggtttctataggacatgtgacatcatttttttgtcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||   |||||
Sbjct: 759 gagggcttaagcaatatgattagggtttctataggacatgtgacatcagcttaaggtcac 700

                                                                       
Query: 244 aatcaaggagacaagttggaaagacattccaggcaagtagaacacatgtcagacacccag 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 699 aatcaaggagacaagttggaaaggcattccaggcaagtagaacacatgtcagacacccag 640

                                                                       
Query: 304 ggtcatatgatgtcatgaggacagagatgatacagcattgtggactccgtaatatggtgt 363
           |||||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||
Sbjct: 639 ggtcatatgacgtcatgaggacagagatgatacagcatcatggactccgtaatatgctgt 580

                                                                       
Query: 364 gtcattgaactcggttgcctcctcaggaaagcctctctaggcagcagcagaggtagggct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtcattgaactcggttgcctcctcaggaaagcctctctaggcagcagcagaggtagggct 520

                                                                       
Query: 424 cagtcacaaaacacagaaaggacagaaagttcaaggccactgtcataacccgcaagccag 483
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 519 cagtcacaaaacacagaaaggacagaaagttcaaggtcactgtcataacccgaaagccag 460

                                                                       
Query: 484 gcagagctccttcctccatagtgtgggaagactgagaatatccaccagagccatggcggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gcagagctccttcctccatagtgtgggaagactgagaatatccaccagagccatggcggt 400

                                                                       
Query: 544 tgtggctccttccaactgaagccctacagcttgtgtttgctcctcacagacagcagcgat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtggctccttccaactgaagccctacagcttgtgtttgctcctcacagacagcagcgat 340

                                       
Query: 604 gaggaccagccctccagaggtcccagga 631
           ||||||||||||||||||||||||||||
Sbjct: 339 gaggaccagccctccagaggtcccagga 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)