BAC Information

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BAC

Clone NameMSMg01-479H07
Chromosome6 (Build37)
Map Location 108,842,778 - 108,843,269
singlet/doubletsinglet
Overlap genenone
Upstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479H07.T7 (MSMg01no479_h07.b1)MSMg01-479H07.TJ (MSMg01no479_h07.g1)
ACCAG560332AG560333
length758761
length of high quality
(start - end)
595 (74 - 668)234 (83 - 316)
definitionCHROMAT_FILE: MSMg01no479_h07.b1 PHD_FILE: MSMg01no479_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:27 2005CHROMAT_FILE: MSMg01no479_h07.g1 PHD_FILE: MSMg01no479_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGATAGGAGGCGC
NGGAATCATTCCTTTCTTGAAACCCTCTCTGCCTAATGTGAGTGTGGCAG
TGATTCTACCATGTCCCTTATGGAAGGAAGCAGAGACGAAACTCTGCTGT
TTGGACACCAACACTTTGTTCCCTCCCTCCCCGCCCACCATGTTCTCCTA
ACAGACCTTGCTTGGCACAGCAAATCTTTATGGCTCCAAATTTGCTCAAA
CCAAGTGATTTATCAGAAGCAGCACCTACATAAATGTATTGAGGGAAAAA
TATAAACTATTAGTAAACTACTTCNTTCTCCGAGCACTTCATACTGTCTG
TGGGGGTGTGTATGAATGCATATGTGTGTACATATGCATATAGTGTACAC
ACACACACACGTATTCCCCCGCACACACACACTTAGTTGTCTATAGGATG
GTTTACAAGTCAATTCTACTTCTAGAAGAATAAACCAGGGACTGCTGAGA
TAGCTCAGCAGATAAAAGGGCTAGAAGCCAAGACTGACAGCCTGAGTTTA
ATCTCTGAGCCCCATATGGAGAGAACTGACTCTCGAAAGTTGTCCTCTGG
CTTACACAATAAGCAAATAAAAGTTCTTTAAAAGTAAATTAAAAAGAAAA
AAAAAAAGAAAGAAAGATTTTTGAGCCAAGCATGGTAACCTAGGCCCATA
ATCCTAGCACTTAAGATGCAGAAACAGGAATACCGTCTACGTTCAGGTCC
ATTATCAA
TTCCGATGCTGTGTGTAGGCTGGNGGNCGCCTGGTCACAAACTGGGGTGA
ACNANAGAAGTTCGAAAAAAATTCGCAGAAGAACATCCAACCAACTGTGG
CAATCCCAACAGGCTCTCTGGCTACAAATCCCTCCCCTTTGGATATGAAC
TAGACTCCAAGCCTTGCCAACCTCCTCCTTCTGAAGGCTCAGGGAACATT
CCAGAAGAGGGAACAGAAACAATGTAAGATCTGGAGCAAGGGGAGGAGTT
TTGTGAAAGGCTATCTTCCGGCAACCAGACAAGGCTGTTGCACTTATAAA
CTCTGCAGCTCCACTTGACTTGGACAAAGGCAGACCAATAACTCACTCAA
AACCCCCACAGGCAGCACTCATTTGGCTAAACAAACAAAGGAAAACACAG
AAAGAACTTGAAGGCGGCAAGGGGGGATGTTGGGAGAGTAGTGGGGTTTC
CCTCCTCCCTCTCTTCTCTTTCCCTCGTCCTTTTCCTTTCCCTCCTTTCT
CCTTGTTCCCGCGTTTTTTCTCTTGTTCCTCTCCCCCCCCCTTTTTCCCT
GTTTTCCCTTCCCGCCCTTCTGCCCTTCTTGTGTTTCCATGCTCTCCCCT
TTTGCTTTTTTTTTTCTCCCCCCCCTTTCTCCCCCTTCCCACACCCATTT
TTCCTTTCTTTTTTTTCCATGCTTTTTGTGTGCTTATTCCTTTCCCCACC
TTTTTTTTCCCCGTATTCCCCCTCCCCTTTTTCTTTCATTTTTTTTTACC
TTTTCTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_h07.b1 MSMg01no479_h07.b1 CHROMAT_FILE:
MSMg01no479_h07.b1 PHD_FILE: MSMg01no479_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:27 2005
         (595 letters)



>mm_chr6_108842778_108843772
          Length = 995

 Score =  866 bits (448), Expect = 0.0
 Identities = 481/498 (96%), Gaps = 14/498 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctctgcctaatgtgagtgtggcagtgattctaccatgtcccttatggaaggaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cctctctgcctaatgtgagtgtggcagtgattctaccatgtcccttatggaaggaagcag 433

                                                                       
Query: 61  agacgaaactctgctgtttggacaccaacactttgttccctccctccccgcccaccatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agacgaaactctgctgtttggacaccaacactttgttccctccctccccgcccaccatgt 373

                                                                       
Query: 121 tctcctaacagaccttgcttggcacagcaaatctttatggctccaaatttgctcaaacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tctcctaacagaccttgcttggcacagcaaatctttatggctccaaatttgctcaaacca 313

                                                                       
Query: 181 agtgatttatcagaagcagcacctacataaatgtattgagggaaaaatataaactattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtgatttatcagaagcagcacctacataaatgtattgagggaaaaatataaactattag 253

                                                                       
Query: 241 taaactact--tcnttctccgagcacttcatactgtctgtgggggtgtgtatgaatgcat 298
           |||||||||  ||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taaactactgctc--actccgagcacttcatactgtctgtgggggtgtgtatgaatgcat 195

                                                                       
Query: 299 atgtgtgtacatatgcatatagtgt--acacacacacacacgtattccccc----gcaca 352
           |||||||||||||||||||||||||  |||||||||||||||||||    |    |||||
Sbjct: 194 atgtgtgtacatatgcatatagtgtacacacacacacacacgtatt----cgtgtgcaca 139

                                                                       
Query: 353 cacacacttagttgtctataggatggtttacaagtcaattctacttctagaagaataaac 412
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 138 cacacacttagttgtctataggatggtttacaggtcaattctacttctagaaaaataaac 79

                                                                       
Query: 413 cagggactgctgagatagctcagcagataaaagggctagaagccaagactgacagcctga 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cagggactgctgagatagctcagcagataaaagggctagaagccaagactgacagcctga 19

                             
Query: 473 gtttaatctctgagcccc 490
           ||||||||||||||||||
Sbjct: 18  gtttaatctctgagcccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)