Query= MSMg01no479_h24.b1 MSMg01no479_h24.b1 CHROMAT_FILE:
MSMg01no479_h24.b1 PHD_FILE: MSMg01no479_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:31 2005
(607 letters)
>mm_chr6_30933429_30934435
Length = 1007
Score = 629 bits (325), Expect = 0.0
Identities = 331/333 (99%)
Strand = Plus / Minus
Query: 1 cattgcagatagaaggccccgcagatattcatcgttgtctagtccagccatgtgagctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cattgcagatagaaggccccgcagatattcatcgttgtctagtccagccatgtgagctct 274
Query: 61 tcataagaagctattggttgtcaggacatccttcatacaaaaacactcatacacagccgg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcataagaagctatcggttgtcaggacatccttcatacaaaaacactcatacacagccgg 214
Query: 121 cgctcaggctcagaaagatggagccgagactgaggaaaaggccaaccaatggctggccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 213 cgctcaggctcagaaagatggagccgagactgaggaaaaggccaaccaatgactggccca 154
Query: 181 acctgagccccatcccacaggagagagccaacccctgacactatgaatgatactcagcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 acctgagccccatcccacaggagagagccaacccctgacactatgaatgatactcagcta 94
Query: 241 tgcttgcagtcaagatcctagcataactgtctcctgagaggtttcatccaacagtgaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tgcttgcagtcaagatcctagcataactgtctcctgagaggtttcatccaacagtgaatg 34
Query: 301 gaaacagatgcagagacccacagccaaacatca 333
|||||||||||||||||||||||||||||||||
Sbjct: 33 gaaacagatgcagagacccacagccaaacatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_h24.g1 MSMg01no479_h24.g1 CHROMAT_FILE:
MSMg01no479_h24.g1 PHD_FILE: MSMg01no479_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:31 2005
(520 letters)
>mm_chr6_30756100_30757019
Length = 920
Score = 932 bits (482), Expect = 0.0
Identities = 515/530 (97%), Gaps = 11/530 (2%)
Strand = Plus / Plus
Query: 1 agggtttccaaagtgggaggtggtaatgtatctccaggttaagcaagg-atgttaggcag 59
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 201 agggtttccaaagtgggaggtggtaacgtatctccaggttaagcaaggaatgttaggcag 260
Query: 60 attttcaaagactaagcagagttctcttcataagagaagcaagtcagtaagtaacccagc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttcaaagactaagcagagttctcttcataagagaagcaagtcagtaagtaacccagc 320
Query: 120 ctttatttagtgaagaaacaacttcactaatttagaaaacagaagaatattaaagacaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ctttatttagtgaagaaacaacttcactaatttagaaaacagaagaatattaaagac-aa 379
Query: 180 aaaaaaaaaagagagagagagaaagtagtaggactatcacatagtttattataaaatcag 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaaaaagagagagagagagaaagtagtaggactatcacatagtttattataaaatcag 439
Query: 240 aaaatttgagttgggtttagtggcaaaatgatcagaagttcacagccaacctgggataca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaatttgagttgggtttagtggcaaaatgatcagaagttcacagccaacctgggataca 499
Query: 300 gaggaagaccctgtcttagaaaaaaaaaaaaaaaaaaaaaaa-----gaatgaaagaaaa 354
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 500 gaggaagaccctgtcttagaaaaaaaaaaaaaaaaaaaaaaaaaaaagaatgaaagaaaa 559
Query: 355 gaaaaaggt--aaaaaaaaaaaaggaaaaaagcaaaagaaagaaaaaagaaaacaaccaa 412
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 560 gaaaaaggttaaaaaaaaaaaaaggaaaaaatcaaaagaaagaaaaaagaaaacaacaaa 619
Query: 413 aaaagaaaaagacaaaaaaaaa--ggaactatgagaattgaaagaaaagttggacacagg 470
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaagaaaaagacaaaaaaaaaaaggaactatgagaattgaaagaaaagttggacacagg 679
Query: 471 ttgaattataattaatatggcctacaacaaaaattcacatagctccaatg 520
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgaattataattaatatggcctacaacaaaaattcacatagctccaatg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
