Query= MSMg01no481_a18.b1 MSMg01no481_a18.b1 CHROMAT_FILE:
MSMg01no481_a18.b1 PHD_FILE: MSMg01no481_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:32 2005
(712 letters)
>mm_chr6_112718771_112719882
Length = 1112
Score = 1143 bits (591), Expect = 0.0
Identities = 685/735 (93%), Gaps = 33/735 (4%)
Strand = Plus / Plus
Query: 9 gaattcataaaaaccatacctgaggtgcacacataaaaggtggatggcacctgagttgtc 68
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcataaaaaccagaggtgaggtgcacacataaaaggtggatggcacctgagttgtc 269
Query: 69 tatcagcctccatacacatgtgcatacatgtatacacacacatatcagtatgcatacata 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tatcagcctccatacacatgtgcatacatgtatacacacacatatcagtatgcatacata 329
Query: 129 ttaatatacataagcataaaggaaaaaaatataatgtctttccttggtcaaagacacaag 188
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttaatatatataagcataaag-aaaaaaatataatgtctttccttggtcaaagacacaag 388
Query: 189 attcctttatatacaaggctcggctccttcttccgttacccagattttgtactactgcag 248
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 389 attcctttatatacaaggctcggccccttcttctgttacccagattttgtactactgcag 448
Query: 249 aggtgacattctagttatcccaatttgtacttcctgctcccccttaggcctctaatagaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aggtgacattctagttatcccaatttgtacttcctgctcccccttaggcctctaatagaa 508
Query: 309 gcggtagttgccagaggtcatgaagactagctgtactggctggttttatgtgtcaacttg 368
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtagtagttgccagaggtcatgaagactagctgtactggctggttttatgtgtcaacttg 568
Query: 369 acaca-----------------------------ggctggggttatcatagagaaaggag 399
||||| |||||||||||||| ||||||| |||
Sbjct: 569 acacatatgtatgtatgtatgtatgtatgacacaggctggggttatcacagagaaaagag 628
Query: 400 cttcagttggtgaagtgcctctatgagatccagctgtggggtattttctcaattagtgat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cttcagttggtgaagtgcctctatgagatccagctgtggggtattttctcaattagtgat 688
Query: 460 caagggggaaaggcccct-gtgggtgggaccatttctgggctggaagtcttgggttctat 518
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caagggggaaaggccccttgtgggtgggaccatttctgggctggaagtcttgggttctat 748
Query: 519 aagagagcaggctgagcaagccaggggaagcaagccagtaaaggacatcccctccatggc 578
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 749 aagagagcaggctgagcaagccagggaaagcaagccagtaaagaacatccc-tccatggc 807
Query: 579 ttctgcatcagctcctgctttctgacctgtttgagttccagtcctgacttcctt-ggtga 637
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 808 ttctgcatcagctcctgctttctgacctgcttgagttccagtcctgacttcctttggtga 867
Query: 638 tgaacagcaatgtggaagtgtaagctgaataaaccctttcctccccaagtgcttcttagt 697
| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 868 tcaacagcagtgtggaaatgtaagctgaataaaccctttcctccccaagtgcttcttggt 927
Query: 698 catgatgtttgtgca 712
|||||||||||||||
Sbjct: 928 catgatgtttgtgca 942
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_a18.g1 MSMg01no481_a18.g1 CHROMAT_FILE:
MSMg01no481_a18.g1 PHD_FILE: MSMg01no481_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:32 2005
(576 letters)
>mm_chr6_112881565_112882539
Length = 975
Score = 1013 bits (524), Expect = 0.0
Identities = 563/578 (97%), Gaps = 5/578 (0%)
Strand = Plus / Minus
Query: 1 ttgccctacagcacactggaacctcgggtggtgggtcacagaaacttgcatctcaaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttgccctacagcacactggaacctcgggtggtgggtcacagaaacttgcatctcaaactt 716
Query: 61 cccaggttgcttagtctggaacagaacagccgaactctgtaaaccgagttggggtggtca 120
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 715 cccaggttgcttagtctggaacagaacagccgaactctgcataccgagttggggtggtca 656
Query: 121 cgcccatttgtctgtcttcacactggcaggtggaggcttttactatggtgccttttcggg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 655 tgcccatttgtctgtcttcacactggcaggtggaggcttttactatggtgccttttcagg 596
Query: 181 agcctgggcaccactgggaaccaaactgcagccttggccttggtttgagccttgcggccc 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 595 agcctgggcaccactgggaaccaaactgcagcctcagccttggtttgagccttgcggccc 536
Query: 241 ttggccatgta--tttcacatatctccttcccaagcttggggtggtgagagcggcaaatt 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttggccatgtagc---cacatatctccttcccaagcttggggtggtgagagcggcaaatt 479
Query: 299 gttggaccctgtgattgcgatcctttggtatctggggctgagcctccttaggcttccctg 358
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 gttggaccctgtgattgtgatcctttggtatctgggactgagcctccttaggcttccctg 419
Query: 359 gggccctgatggcctcttcttggcattcagtgccttcacgttgtttgctagcatgttctt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gggccctgatggcctcttcttggcattcagtgccttcacgttgtttgctagcatgttctt 359
Query: 419 caggcccttcttgtgcttctgggcaaaatgcatgttccttgggaacttgggtcctccacc 478
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 358 caggcccttctcgtgcttctgggcaaaatgcatattccttgggaacttgggtcctccacc 299
Query: 479 ttaacagttcataactgttgtatagaggtttcttggtgccattttggggactggttgtgt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttaacagttcataactgttgtatagaggtttcttggtgccattttggggactggttgtgt 239
Query: 539 gcagtgtggttcttgcacttgaccaagtctgcatggta 576
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcagtgtggttcttgcacttgaccaagtctgcatggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
