BAC Information

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BAC

Clone NameMSMg01-481N02
Chromosome6 (Build37)
Map Location 134,063,664 - 134,177,993
singlet/doubletdoublet
Overlap geneEtv6
Upstream geneLOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481N02.T7 (MSMg01no481_n02.b1)MSMg01-481N02.TJ (MSMg01no481_n02.g1)
ACCAG562134AG562135
length741731
length of high quality
(start - end)		698 (44 - 741)314 (71 - 384)
definitionCHROMAT_FILE: MSMg01no481_n02.b1 PHD_FILE: MSMg01no481_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:34 2005CHROMAT_FILE: MSMg01no481_n02.g1 PHD_FILE: MSMg01no481_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,063,664 - 134,064,357)(134,177,681 - 134,177,993)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCCATGGATACCTAATGGAAGTATAAGGAAAAAAAGCCCTACTGTG
GTCTGCTGGCACCTCAGTAGGCTGTCATTTGCTTTCCTCAGACAATTCCT
TTCCAGTGCTTTAGTTACATACCCGCTGGTATCCTGAGGAGAACCTTTCC
CCAAGTGTGTACAGACACATTTGCTCTGCCCTGTGAGTGAGTGTCTCCTG
GATGCGAGCCCTTCTGAACTTCATGTTGTTTCTCTCCCCTTCTAGATCTG
GCCCCTAGCGTCCTTGAGACCCACTAAAGAGGAGAGTGGAGAGGCTGCCC
TTCACAATACTGCATTTTAAAAGTGGGAAGCACTGCAAGGGAGAAGTGAT
TTTAAGTATGGGTTTTTCTGTGGTGGCATCTCTCTATTACAATAAAAAAG
TCATGAATAAATCTAAAGAGGCAGGTTTTGGTCTTTAGGAAGCAATGATG
AATGAAAACAAAAAATATGCATATATAATGTATTGCCAACACCTTCAGCA
ACATTTAATAGAAAAAAATATTAAAAACAGAACTAGGAGCTGGGGTTATA
GTTCCAATGGTAGAGTGCTTGCCTACTGTGTACAAAGCCTTGAGTTCAGT
CCTGGAGAGAGAATTGGAATGAGGGTGCTTACAGTGAAAGCCAAGTGTCA
TTCGCTTCTCCATGGTATTCTCTATGAAAGTGAGAACATGT

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGTACATCGCTGTCACCGGCTCGCATTG
CTGGGGTTGCAGGCAGATACAGCTATGCTCAACTTTTGAAGTGAGTGTTG
AAAAGGTGGCAGTTCAGATCTCCAGCTTACACAACACCGGATCTACTGAG
GCCACTCGTCAGACCCCAATTTTATTATTTTATTTGGAATTTCCTTTAAA
AGCTGGGCCTGCTAATGCCCACTACACACCTCCGAAGACCGAGGTGAAGG
TTGCAAACTCAAGATCTGCCAGGATAACTCAGCATGACCCTGTCCATGCT
GGGGTGGGACTGGTGGGTAGGGGTGGGGATGGANNTNNNNNNNNNNNNNN
NNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNTNNNNNN
NNNNNNNNTTTNTNNTTTNTNTTTTTNTTTTTTTTTTTNTTTTTTTTNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTTTTTTT
TTTTTTNNTTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTNTNNTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_n02.b1 MSMg01no481_n02.b1 CHROMAT_FILE:
MSMg01no481_n02.b1 PHD_FILE: MSMg01no481_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:34 2005
         (698 letters)



>mm_chr6_134063460_134064557
          Length = 1098

 Score = 1226 bits (634), Expect = 0.0
 Identities = 679/694 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccatggatacctaatggaagtataaggaaaaaaagccctactgtggtctgct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagccatggacacctaatggaagtataaggaaaaaaagccctactgtggtctgct 264

                                                                       
Query: 65  ggcacctcagtaggctgtcatttgctttcctcagacaattcctttccagtgctttagtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ggcacctcagtaggctgtcatttgctttcctcagacaattcctttccagtgctctagtta 324

                                                                       
Query: 125 catacccgctggtatcctgaggagaacctttccccaagtgtgtacagacacatttgctct 184
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 325 catacccgctggtatcctgaggagagcctttccccaagtgtgtacagacacattggctct 384

                                                                       
Query: 185 gccctgtgagtgagtgtctcctggatgcgagcccttctgaacttcatgttgtttctctcc 244
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 gtcctgtgagtgagtgtctcctggatgcgagcccttctgaacttcatgttctttctctcc 444

                                                                       
Query: 245 ccttctagatctggcccctagcgtccttgagacccactaaagaggagagtggagaggctg 304
           ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct: 445 ccttctagatctggcccctagtgtccttgagacccactaaagaggagagtagagagactg 504

                                                                       
Query: 305 cccttcacaatactgcattttaaaagtgggaagcactgcaagggagaagtgattttaagt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 cccttcacaatactgcattttaaaagtgggaagcactgcaagggagaagtgattttaact 564

                                                                       
Query: 365 atgggtttttctgtggtggcatctctctattacaataaaaaagtcatgaataaatctaaa 424
           |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 atgggtttttctgtggcggtatctccctattacaataaaaaagtcatgaataaatctaaa 624

                                                                       
Query: 425 gaggcaggttttggtctttaggaagcaatgatgaatgaaaacaaaaaatatgcatatata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaggcaggttttggtctttaggaagcaatgatgaatgaaaacaaaaaatatgcatatata 684

                                                                       
Query: 485 atgtattgccaacaccttcagcaacatttaatagaaaaaaatattaaaaacagaactagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtattgccaacaccttcagcaacatttaatagaaaaaaatattaaaaacagaactagg 744

                                                                       
Query: 545 agctggggttatagttccaatggtagagtgcttgcctactgtgtacaaagccttgagttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agctggggttatagttccaatggtagagtgcttgcctactgtgtacaaagccttgagttc 804

                                                                       
Query: 605 agtcctggagagagaattggaatgagggtgcttacagtgaaagccaagtgtcattcgctt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agtcctggagagagaattggaatgagggtgcttacagtgaaagccaagtgtcattcgctt 864

                                             
Query: 665 ctccatggtattctctatgaaagtgagaacatgt 698
           ||||||||||||||| |||||||||| |||||||
Sbjct: 865 ctccatggtattctccatgaaagtgaaaacatgt 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_n02.g1 MSMg01no481_n02.g1 CHROMAT_FILE:
MSMg01no481_n02.g1 PHD_FILE: MSMg01no481_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:35 2005
         (314 letters)



>mm_chr6_134177481_134178194
          Length = 714

 Score =  497 bits (257), Expect = e-145
 Identities = 299/313 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtacatcgctgtcaccggctcgcattgctggggttgcaggcagatacagctatgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttggtacatcgctgtcaccggctcgcattgctggggttgcaggcagatacagctatgctc 454

                                                                       
Query: 61  aacttttgaagtgagtgttgaaaaggtggcagttcagatctccagcttacacaacaccgg 120
           |||||| ||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 453 aactttggaactgagtgttgaagaggtggcaggtcagatctccagctaacacaacaccgg 394

                                                                       
Query: 121 atctactgaggccactcgtcagaccccaattttattattttatttggaatttcctttaaa 180
           | | |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 agccactgcggccacgcgtcagacaccaattttattattttatttggaatttcctttaaa 334

                                                                       
Query: 181 agctgggcctgctaatgcccactacacacctccgaagaccgaggtgaaggttgcaaactc 240
           |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 333 agctgggcctgctaatacccactacacacctccgaaaaccgaggtaaaggttgcaaactc 274

                                                                       
Query: 241 aagatctgccaggataactcagcatgaccctgtccatgctggggtgggactggtgggtag 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aagacctgccaggataactcagcatgaccctgtccatgctggggtgggactggtgggtag 214

                        
Query: 301 gggtggggatgga 313
           |||||||||||||
Sbjct: 213 gggtggggatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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