BAC Information

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BAC

Clone NameMSMg01-481N20
Chromosome6 (Build37)
Map Location 148,438,965 - 148,439,188
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
Downstream geneEG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481N20.T7 (MSMg01no481_n20.b1)MSMg01-481N20.TJ (MSMg01no481_n20.g1)
ACCAG562170AG562171
length745730
length of high quality
(start - end)		297 (70 - 366)593 (75 - 667)
definitionCHROMAT_FILE: MSMg01no481_n20.b1 PHD_FILE: MSMg01no481_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:38 2005CHROMAT_FILE: MSMg01no481_n20.g1 PHD_FILE: MSMg01no481_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAAGTGTCCACTGTGAAGTGTTGTGGCTGGCTGTGACTCTTA
TTTTCTTAGATTGAAAACTACTAAAAGTTGGTGAAAATGCTAAGACTAAA
GGGGAAGCCAGTGATAAAAGAAAGGGTCTTTTTTAGTATATGGAGCGATA
GGGAAAAGATAGATGATAGATATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAAATAGATAGATGATAGATAGAGATAGTCTGAG
ATAGATAGACATAGATGATAGATATATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATGATTTATCGATAATTGATAGATAGAATTATTCTGATA
TATATTTTTAGTACTTATCACCCCCCCCTTGTTATATAGATGTATAGACA
TATCTATTTCTCCTTTTTCTTATTCATACTTTCACTTTCTTCACTTTTAA
TTATCTTCGCTGATTCATTGGCTTACGTGCCTTCTTGCCTATATTCCTTT
TTTGGTGTTAAATGTTTTTATCTCTCTTTGTTATGTTTCAATTTTAATTT
ATACGTTGTTTCCTATCCTCTTTTTTTTTTTCTTTCTCCCCTTTTTCTTG
CGCTCTTTTCTTTCTTTTTTCGTTTATTCCCTGCTCCCTTCCCTCTTTGC
TACTTTTCCTCCTCATTATTTTCTTTTATCCTCATTTTGTATTCG

GTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAAATGGAGGGCACACCTGTGATT
CAGGTCTTGAGGGTGGAAGACACAGGTTTTTGATCTGGATCTTGAAGCAT
AGGCCATGAAAAGCTTAGGCCCAGGCAAGGTGATACAGGCCTTTAATCCC
AGGAGCTAGAGGCAACTATATCTTTGAGTTCAAGGCTATCCTGGGACAGA
GCAAGCTCCAAGTAAAAAGAATAGCTTAGGTTTAAGCATGGTGGCACACA
CTTTTAATCTGGACCATACCTTCTGCTGGAGGCCTACATAAGGACATTGG
AAAAAGGAAGGGTTTCGTCTTCTTTGCCTGCTTGCACTTATTTGCCAGCA
CATACATCTGTGGGAACCTTCCTCAGAATTCCAGCTTATATAGAAGTGGA
AACACCTATCCTTGTGCAGCACTGAACAATTACTAGATTTTTGGACTTCC
CACTCACAGCTGCCAATTGTTGGATAAGTTGAATTGCAGACTGTAAATCA
TCCCAATAAATTACCTTAATATATAAATACATTCCATAAGTTCTGTGACT
CTAGAGAGCCCTGTCTAATACAACAATCTATATAGACTACATGGATACCA
ACTTAGTTCCATCGCCTAGATGTTGTAAAAAATGTTTAGATCTTTCCTCA
ACATGTTCTTAAAAGGAAATGGACATTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_n20.b1 MSMg01no481_n20.b1 CHROMAT_FILE:
MSMg01no481_n20.b1 PHD_FILE: MSMg01no481_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:38 2005
         (297 letters)



>mm_chr6_148438765_148439461
          Length = 697

 Score =  308 bits (159), Expect = 4e-88
 Identities = 200/225 (88%), Gaps = 19/225 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaagtgttgtggctggctgtgactcttattttcttagattgaaaactactaaaagtt 60
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgtgaagtgttgtggctggttgtgactcttattttcttagattggaaactactaaaagtt 260

                                                                       
Query: 61  ggtgaaaatgctaagactaaaggggaagccagtgataaaagaaagg-------------- 106
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 261 ggtgaaaatgctaagactaaaggggaagccagtgataaaagaaaggtttttcttttgttt 320

                                                                       
Query: 107 ----gtcttttttagtatatggagcgatagggaaaagatagatgatagatatagatagat 162
               || ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 321 gtttgt-ttttttagtatatggagtgatagggaaaagagagatgatagatataggtagat 379

                                                        
Query: 163 agatagatagatagatagatagatagatagatagataaatagata 207
           ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 agatagatagatagatagatagatagatagatagatagatagata 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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