BAC Information

Click to search

BAC

Clone NameMSMg01-483J10
Chromosome6 (Build37)
Map Location 119,525,490 - 119,525,835
singlet/doubletsinglet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483J10.T7 (MSMg01no483_j10.b1)MSMg01-483J10.TJ (MSMg01no483_j10.g1)
ACCAG563482AG563483
length759726
length of high quality
(start - end)
273 (327 - 599)347 (82 - 428)
definitionCHROMAT_FILE: MSMg01no483_j10.b1 PHD_FILE: MSMg01no483_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:50 2005CHROMAT_FILE: MSMg01no483_j10.g1 PHD_FILE: MSMg01no483_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAGAGGAGGC
GCGGAATTCAGCAGTACAAAAAACTTGCTGCCAGGCCTGACAACCTGAGT
TCGAGTCCCAGAGCTTACATGATACGAGAGAAACAACTCCTACAGTACTC
CCAAATATCATCTTCAAAAGTTGTTTTTAAGCTGGGCATGGTGGCGCACG
CCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGCATTTCTGAGTTCG
AAGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG
AGAAACCCTGTCTCAAATTCTTCTTACAAACAAACAAACAAACAAACAAA
CAAAACCAACCAAACAAACAAACACCAAAAGTTGTTTTTAGAGCCGGGCT
GGGGGGTTTATGCCCCCCACTCCAGCACTTGGGAGGCAGAGACAGGTAGA
TTTCTGTGAGTTCGAAGCCAGCCTGGTCTACCAGGGATACACAGAGAAAC
CCTGTCTCAAAAAAGCAAACAAAACAAAACGAAAACACAACAAAAAAGTT
ATTAAATGTGTGTGTGTGTGGTATGTGTGTAAGAGAGAGAGAAACAGGGA
CAGAGAGACAGAGACTGAGATAGAGACAGAGACAGTGGGTGCTCACTCAC
TATAGCACTCTCATAGACGGCAGAGGATTCTGGGTAATTCGTTCTTCTAC
CTTGATCTGAGGCAGGATCTCTCTTGCCTCACTCTCCCACAGAATGATTA
CATGTGGAG
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTCGGTACAAATAACC
TGAACTCCACCTGAACCCTGCCTCTTTTCCCTTTCAGCTTCAGAACGAGT
TGGAGAAAGTTGAAGGGGACAACGCCGAGCTGCAGGAGTTTGCCAACACC
ATTCTCCAGCAGATAGCCGATCACTGCCCTGACATCCTCGAACAAGTGGT
CAATGCCCTGGAAGAGTCCTCCTGATGTGCTCCTGACAAGGAGGGTGACC
AAGGAGCCAGAGAGGGAACCTGATTATTAGGTGTCTGAGCCGCCACCACA
CCAGACTCTGCCAGCTGGATGTGCCAGTCCGGCCGTCGGTGTCTGTCATC
ATACTCTGCCTTCTGCTTTGAATGTTGCCTGCTNCAGTCTCCCTGGTGTC
CATGAAGAACTGCCTTTGCATCANCAGTGAGTGCTGCGAGCTGCCTCTGC
CCTTCCGAAAACGGAGCCGGAGGCCCTCGGTTATCTGGGAGCCCTTCCAA
TTCCTGGTCCTGGAACCTTGGACCTAAAATTTTTTCCCGAAGGGTTTTCC
CCCCCAAAGGGTTCCCAAAGGGGGGGGGGGAATAACCCCCGGGCCACAAA
AAAAAAAAAAGAAATATTTTTTTTTGGGGGCCCCGCGGGGGGCGGCCCCG
GTGGTTAAACAAATAAAAGAAACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_j10.g1 MSMg01no483_j10.g1 CHROMAT_FILE:
MSMg01no483_j10.g1 PHD_FILE: MSMg01no483_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:50 2005
         (347 letters)



>mm_chr6_119525289_119526035
          Length = 747

 Score =  630 bits (326), Expect = 0.0
 Identities = 341/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   cactcggtacaaataacctgaactccacctgaaccctgcctcttttccctttcagcttca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cactcggtacaaataacctgaactccacctgaaccctgcctcttttccctttcagcttca 488

                                                                       
Query: 62  gaacgagttggagaaagttgaaggggacaacgccgagctgcaggagtttgccaacaccat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaacgagttggagaaagttgaaggggacaacgccgagctgcaggagtttgccaacaccat 428

                                                                       
Query: 122 tctccagcagatagccgatcactgccctgacatcctcgaacaagtggtcaatgccctgga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctccagcagatagccgatcactgccctgacatcctcgaacaagtggtcaatgccctgga 368

                                                                       
Query: 182 agagtcctcctgatgtgctcctgacaaggagggtgaccaaggagccagagagggaacctg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agagtcctcctgatgtgctcctgacaaggagggtgaccaaggagccagagagggaacctg 308

                                                                       
Query: 242 attattaggtgtctgagccgccaccacaccagactctgccagctggatgtgccagtccgg 301
           |  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aggaacaggtgtctgagccgccaccacaccagactctgccagctggatgtgccagtccgg 248

                                                         
Query: 302 ccgtcggtgtctgtcatcatactctgccttctgctttgaatgttgc 347
           |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 247 ccgtcggtgtctgtcatcgtactctgccttctgctttgaatgttgc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)