BAC Information

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BAC

Clone NameMSMg01-484F21
Chromosome6 (Build37)
Map Location 145,014,314 - 145,187,985
singlet/doubletdoublet
Overlap geneBcat1, Lrmp, Casc1, Lyrm5, Kras
Upstream geneSox5, 4933425H06Rik, EG665149
Downstream geneLOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484F21.T7 (MSMg01no484_f21.b1)MSMg01-484F21.TJ (MSMg01no484_f21.g1)
ACCAG564073AG564074
length757778
length of high quality
(start - end)		687 (71 - 757)613 (75 - 687)
definitionCHROMAT_FILE: MSMg01no484_f21.b1 PHD_FILE: MSMg01no484_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:54 2005CHROMAT_FILE: MSMg01no484_f21.g1 PHD_FILE: MSMg01no484_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,187,299 - 145,187,985)(145,014,314 - 145,014,926)
sequence
NAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCACTATATCCTGACCTCAAACTCCTGGTCCCCATGCCTCAAC
CTCCCAAGTGAGTTCTGGGATTACAGAATGTGTCACCCAAGCCCCAGCCT
TGGCTCTTCAATTCTGTTGTGTTCTGGTATTAGTCATATCCAGCCGCTGT
GCATATTTCTAGCTACCTTTGAGAACTGAGTGTACAATCTTTATAAACAG
TGGTATGGAACACATCATTCTTCAATGGATTTAAATATTTAGAAAGGTAA
TAATATAAAGTGCTAGACCATAATCAGAGAAAGTCAATTTCATAATTTTT
TCCCATAGGTGTTACTAAACAGTAAAAAGTACTTGTAATACATGCTAAGA
AAACAGCAAATCACTGCAGAAGTAAATCCCCAAATAACACATGAGCTGAT
ATTTCAGCATCCCTATTCATAACAAAAGACAAAGGCACAGCCTGAAGGTA
GATTGGATAAGACAGTACCTGTAATAAGCTTATTACCCTGTTTGCATATA
AGTAAGGGCTCAGTACACATCAGCTGCTGTAATTACTATTAATAGTAATA
GGAGTCCTTTCAGTGAAAGCCTCATTACCTTTTAAGTTTCTGTTCACTGT
TGCCTGTCTTCCCAAGTTGATTATTCTAAAAAATGAGCATACTAAATATA
ATTGAGTTGCACTAGAAAACCACAGGCCTTTCTGGTCATTGAGTTTTTCT
TTCCTTG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAGCTCAACTAGTTGAG
ACTCTGTTTCAAGTGATCAAATGAAACAAAAGTAGGTTTTAAATGTGGTT
GTTTCCGTGTCAGCTTTAGATCAGCTGAGGCGGTTCAGTACACTGCCTCT
ACCTCTTCACGGATAATTCGCCTTAGCCCAACTTCCACAGATAGGCCACT
GGGACTTTTGCGTATTTTCTTGTTTTGGCTTGTGGGAGTGACGAGCCTGC
TCTTCGTGAGCTGTGCCTATAAGCACTCTGAGGTCCCAGGTGGCAGCCAT
TAGACAACTCACCTGAATGAGTTTGTCTTTTCCTCAGTCCCTTGCCCTGT
TAATCAGGGTTCTAGGAAACAGGCCTGCAAGGCCATGCAAGTACGCACTT
TTAACTAATAAGCCACCTCTCCAGAGCCTCCCTCACATTTGTTGTGGTGA
AGATGCGTACTGGGTCTGAAGTGCTTCCATTTTTATTTTTTGGGTTGTTT
TGTTGTTTAGCTTTGTTTTTGAGAGATGGTCTTGGGTAGCTTANACTGGC
CTGGAACTCACTGTGTGGCTCCGGCTGGCTTANGCCACCTGATCAGACAG
TCTTCTTCTGCAGTAATGGTTGCAATGCACTCATGGGGTGTGCTCCACCA
CGCCCCAGATGCAAGCGCTCCTTTGACCTCGCGTGTCATTTGTGAATCCT
GAGCTGTGTATAACTTTGTGGAGCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_f21.b1 MSMg01no484_f21.b1 CHROMAT_FILE:
MSMg01no484_f21.b1 PHD_FILE: MSMg01no484_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:54 2005
         (687 letters)



>mm_chr6_145187025_145188111
          Length = 1087

 Score = 1321 bits (683), Expect = 0.0
 Identities = 686/687 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctcaaactcctggtccccatgcctcaacctcccaagtgagttctgggattacagaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 acctcaaactcctggtccccatgcctcaacctcccaagtgagttctgggattacagaatg 902

                                                                       
Query: 61  tgtcacccaagccccagccttggctcttcaattctgttgtgttctggtattagtcatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tgtcacccaagccccagccttggctcttcaattctgttgtgttctggtattagtcatatc 842

                                                                       
Query: 121 cagccgctgtgcatatttctagctacctttgagaactgagtgtacaatctttataaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cagccgctgtgcatatttctagctacctttgagaactgagtgtacaatctttataaacag 782

                                                                       
Query: 181 tggtatggaacacatcattcttcaatggatttaaatatttagaaaggtaataatataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggtatggaacacatcattcttcaatggatttaaatatttagaaaggtaataatataaag 722

                                                                       
Query: 241 tgctagaccataatcagagaaagtcaatttcataattttttcccataggtgttactaaac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgctagaccataaacagagaaagtcaatttcataattttttcccataggtgttactaaac 662

                                                                       
Query: 301 agtaaaaagtacttgtaatacatgctaagaaaacagcaaatcactgcagaagtaaatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agtaaaaagtacttgtaatacatgctaagaaaacagcaaatcactgcagaagtaaatccc 602

                                                                       
Query: 361 caaataacacatgagctgatatttcagcatccctattcataacaaaagacaaaggcacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaataacacatgagctgatatttcagcatccctattcataacaaaagacaaaggcacag 542

                                                                       
Query: 421 cctgaaggtagattggataagacagtacctgtaataagcttattaccctgtttgcatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cctgaaggtagattggataagacagtacctgtaataagcttattaccctgtttgcatata 482

                                                                       
Query: 481 agtaagggctcagtacacatcagctgctgtaattactattaatagtaataggagtccttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtaagggctcagtacacatcagctgctgtaattactattaatagtaataggagtccttt 422

                                                                       
Query: 541 cagtgaaagcctcattaccttttaagtttctgttcactgttgcctgtcttcccaagttga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagtgaaagcctcattaccttttaagtttctgttcactgttgcctgtcttcccaagttga 362

                                                                       
Query: 601 ttattctaaaaaatgagcatactaaatataattgagttgcactagaaaaccacaggcctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttattctaaaaaatgagcatactaaatataattgagttgcactagaaaaccacaggcctt 302

                                      
Query: 661 tctggtcattgagtttttctttccttg 687
           |||||||||||||||||||||||||||
Sbjct: 301 tctggtcattgagtttttctttccttg 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_f21.g1 MSMg01no484_f21.g1 CHROMAT_FILE:
MSMg01no484_f21.g1 PHD_FILE: MSMg01no484_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:54 2005
         (613 letters)



>mm_chr6_145014114_145015126
          Length = 1013

 Score = 1174 bits (607), Expect = 0.0
 Identities = 611/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagccagctcaactagttgagactctgtttcaagtgatcaaatgaaacaaaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagccagctcaactagttgagactctgtttcaagtgatcaaatgaaacaaaagta 260

                                                                       
Query: 61  ggttttaaatgtggttgtttccgtgtcagctttagatcagctgaggcggttcagtacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttttaaatgtggttgtttccgtgtcagctttagatcagctgaggcggttcagtacact 320

                                                                       
Query: 121 gcctctacctcttcacggataattcgccttagcccaacttccacagataggccactggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctctacctcttcacggataattcgccttagcccaacttccacagataggccactggga 380

                                                                       
Query: 181 cttttgcgtattttcttgttttggcttgtgggagtgacgagcctgctcttcgtgagctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgcgtattttcttgttttggcttgtgggagtgacgagcctgctcttcgtgagctgt 440

                                                                       
Query: 241 gcctataagcactctgaggtcccaggtggcagccattagacaactcacctgaatgagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctataagcactctgaggtcccaggtggcagccattagacaactcacctgaatgagttt 500

                                                                       
Query: 301 gtcttttcctcagtcccttgccctgttaatcagggttctaggaaacaggcctgcaaggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcttttcctcagtcccttgccctgttaatcagggttctaggaaacaggcctgcaaggcc 560

                                                                       
Query: 361 atgcaagtacgcacttttaactaataagccacctctccagagcctccctcacatttgttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcaagtacgcacttttaactaataagccacctctccagagcctccctcacatttgttg 620

                                                                       
Query: 421 tggtgaagatgcgtactgggtctgaagtgcttccatttttattttttgggttgttttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgaagatgcgtactgggtctgaagtgcttccatttttattttttgggttgttttgtt 680

                                                                       
Query: 481 gtttagctttgtttttgagagatggtcttgggtagcttanactggcctggaactcactgt 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 gtttagctttgtttttgagagatggtcttgggtagcttagactggcctggaactcactgt 740

                                                                       
Query: 541 gtggctccggctggcttangccacctgatcagacagtcttcttctgcagtaatggttgca 600
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtggctccggctggcttaggccacctgatcagacagtcttcttctgcagtaatggttgca 800

                        
Query: 601 atgcactcatggg 613
           |||||||||||||
Sbjct: 801 atgcactcatggg 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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