Query= MSMg01no484_i24.b1 MSMg01no484_i24.b1 CHROMAT_FILE:
MSMg01no484_i24.b1 PHD_FILE: MSMg01no484_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:10 2005
(696 letters)
>mm_chr6_79813645_79814740
Length = 1096
Score = 1286 bits (665), Expect = 0.0
Identities = 689/697 (98%), Gaps = 4/697 (0%)
Strand = Plus / Plus
Query: 3 gaattcttagaa-gt-ttcttaaaaaaatagaactttcacattttttacaaaaatacaaa 60
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcttagaaagtatt-ttaaaaaaatagaactttcacattttttacaaaaatacaaa 259
Query: 61 gaagtatatggaactccaggacaaaaagagagggcctgcctacatcatgcacattagcaa 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaagtatatggaactcgaggacaaaaagagagggcctgcctacatcatgcacattagcaa 319
Query: 121 tattacaaaagtcttaagaatgggagagagaaagagtgctctggctgcctaaggaagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tattacaaaagtcttaagaatgggagagagaaagagtgctctggctgcctaaggaagtga 379
Query: 181 tgaaagctgttaatatcttccagaacaaggcatgaggttaaaacataggtcagatgaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgaaagctgttaatatcttccagaacaaggcatgaggttaaaacataggtcagatgaggg 439
Query: 241 ctggtgcttgagtaggaaggtggatgacaaaccaagtatggcagtaaagagaagagagaa 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 ctggtgcttgagtaggaaggtggatgacaaaccaagtaaggcagtaaagagaagagagaa 499
Query: 301 gcggttgccccccccc-aaccccctctgagaatttctgactcaactgggattacaggaag 359
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 gcggttgccccccccccaaccccctctgagaatttctgactcaactggaattacaggaag 559
Query: 360 gacaggctccaatcagatatattgagggcagggagcacttgagataagcagatgttgttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacaggctccaatcagatatattgagggcagggagcacttgagataagcagatgttgttt 619
Query: 420 tgttttgtttgttattaataagccctcattcaaactaacccagtctatttggcatcagtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgttttgtttgttattaataagccctcattcaaactaacccagtctatttggcatcagtg 679
Query: 480 gagagttacccaatggagggtagacaatggaccagaacaacatccccagaagaaagtaat 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 680 gagagttacccaatggagggtagacaatggaccagaacaacacccccagaagaaagtaat 739
Query: 540 gatccctaggccaccatcaattccaacagtccctctgcaaagggtggggttgccaggaat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gatccctaggccaccatcaattccaacagtccctctgcaaagggtggggttgccaggaat 799
Query: 600 attcttccttatttcctttcattttattattaatttattttattttcatacagaattttt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 attcttccttatttcctttcattttattattaatttattttattttcatacagaattttt 859
Query: 660 tttgattatttaccatcacaatccattgatatattag 696
|||||||||||||||||||||||||||||||||||||
Sbjct: 860 tttgattatttaccatcacaatccattgatatattag 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_i24.g1 MSMg01no484_i24.g1 CHROMAT_FILE:
MSMg01no484_i24.g1 PHD_FILE: MSMg01no484_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:10 2005
(603 letters)
>mm_chr6_79951999_79953001
Length = 1003
Score = 812 bits (420), Expect = 0.0
Identities = 432/436 (99%)
Strand = Plus / Minus
Query: 168 aaactttatctgtagttggtgatattctttgggaaggaagtagaaacttgctgtaagaag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 aaactttatctgtagttggtgatattctttgggaaggaagtagaaacttgctgtaagaag 944
Query: 228 ttcttaaagtctcatactgtgaccctcatttcctattctttctcttggttttgatgtaat 287
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 943 ttcttaaagtctcatactgtgaccctcacttcctattctttctcttggttttgatgtaat 884
Query: 288 gaaaccagagggccttccatgccatctctttgccttttctaccatgaagaatgcatactc 347
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gaaaccagagggccttccattccatctctttgccttttctaccatgaagaatgcatactc 824
Query: 348 tccaactaaaccaaaagaaaccctttctcccttaattacattcttgtcaggttgtttatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tccaactaaaccaaaagaaaccctttctcccttaattacattcttgtcaggttgtttatg 764
Query: 408 gcaacaagaaaagtagtgaaggcagtaacttagacctttgtgtttaaaggtttaagttta 467
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 763 gcaacaagaaaagtagtgaaggcagtaacttagacctttgtgtctaaaggtttaagttta 704
Query: 468 aaaatctattaaacctttccagtgacttgagcatgggatttcgattatctggctcttcac 527
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 703 aaaatctattaaacctttccagtgacttgagcatgggatttctattatctggctcttcac 644
Query: 528 agttttctatctttcacttgatgtgctggctggccttagttcaacttgacacaaaagtag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 agttttctatctttcacttgatgtgctggctggccttagttcaacttgacacaaaagtag 584
Query: 588 agtcatttgggaagag 603
||||||||||||||||
Sbjct: 583 agtcatttgggaagag 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
