BAC Information

Click to search

BAC

Clone NameMSMg01-485D20
Chromosome6 (Build37)
Map Location 109,153,776 - 109,154,053
singlet/doubletsinglet
Overlap geneLOC639110
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485D20.T7 (MSMg01no485_d20.b1)MSMg01-485D20.TJ (MSMg01no485_d20.g1)
ACCAG564732AG564733
length704736
length of high quality
(start - end)		397 (55 - 451)357 (83 - 439)
definitionCHROMAT_FILE: MSMg01no485_d20.b1 PHD_FILE: MSMg01no485_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:07 2005CHROMAT_FILE: MSMg01no485_d20.g1 PHD_FILE: MSMg01no485_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTAGGCAATATTTCCTATCCTTGAAGCTGTGCTCT
TTAGTAAGAGGGAGCTAGTGAGGTGAGAGAATGGGGCTCCAGAGAGCCAT
CCCATTACCCCACCAAGAGTTCAGATACTTTAGAATTAATACAAAGAGGT
TCCCTGAAAGGCCAAATATTTTTCCATTCAAAACTTCTTTTCTCTGATGG
ACAAGCCACCATGGCCCAACTGAACACAACACTCTTGAATCCAGGCTCTT
CAAAGTGTCCCATCCAACTCTCCCTGAACGATATTCTTTTTTTTTTTTTC
TGGAAATGGTGTCTCTTTTATGAAAATGGGTTCCCTGTGTTTGATGAGTA
TACACTTAGGGTTGTAACATCCCATCATTGCATAATGCTTTTAACAAGCT
TAGAGAGTCCTTCTCTATCTCTTTTGGGTAGCTTTGATTTGAGTCTCCTT
TGTGAATGTAGAATAGTAACCCTCGATTGCTCCTGGGTCATTTTCTTGGA
ATACCTTTTTCATTGCTTAAGCTAAGGGAAGGCCTTTTACATTGGGGGGG
AGGATTTTTCTTGGAAGCCAAAAGAAATGGATCCCTTTTCATTTTCCATC
TGGCAGCCGGGGGTTCTTCTTGGGGGAGTTAAAACCTTGGAATTAAGAAT
TGTN

NAAAAANACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGAATTCAGTGAGA
AGTTTACCTATTCAGTAACATTCAGATTTACTTCTAGCAGAGATGGTGAA
ACTAATTAGGCATTACAAAAAACAAAGCTATAATAGCTCTGGGCTACTCT
GCAGAGTGATTATTTAGGAGTTAGGACAGTAGCCAAGTCTCACCCAAACA
AGGGAATACACAATGGCCTAGCAAATAGGTGGGTTTACCATGAAAGAGTT
AGGGAATCCCCTGAGACAGGTTTCTTCACTAGGCCCAAAGGAACAGCATA
GTCAGGCATTTACTAAGAACCCCTGGTGGTGGGCTTAACAATAGACTAGC
ATTACACCTGGCTCCCTTCTTAGTGGTAAACAGCAGCCTGGGCCTGGTCC
CTGGCATCTTTTGATGTATACATTCCCTTTTGTTTTGTGTCACTGTAACT
CTGTGGATGTGTCTCACCTGGTTTCTTGTTTATCTTCTGTATAAAAAGTT
TGATGCTCGATTTGGACAATTTACACTCAGATTCCACCCCCTCCCTTGGG
GCCCCCCCGGTTGGAATTGGCCGAACCCTTTTCCCACCTGGAAAAAAAAA
CCCGTTTTGCCAAAAAAGGAACCCCAAAAAGGGGTTTTCCCGTGGGCCAA
GGGAAAAAAAAAAAACCTTTTCAAAAGGGGCGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_d20.b1 MSMg01no485_d20.b1 CHROMAT_FILE:
MSMg01no485_d20.b1 PHD_FILE: MSMg01no485_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:07 2005
         (397 letters)



>mm_chr6_109153572_109154365
          Length = 794

 Score =  491 bits (254), Expect = e-143
 Identities = 274/282 (97%), Gaps = 5/282 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaggcaatatttcctatccttgaagctgtgctctttagtaagagggagctag 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctttaggcaatatttcctatccttgaagctgtactctttagtaagagggagctag 264

                                                                       
Query: 65  tgaggtgagagaatggggctccagagagccatcccattaccccaccaagagttcagatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaggtgagagaatggggctccagagagccatcccattaccccaccaagagttcagatac 324

                                                                       
Query: 125 tttagaattaatacaaagaggttccctgaaaggccaaata-tttttccattcaaaacttc 183
           ||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||
Sbjct: 325 tttagaattaatacaaagaggctccctgaaaggccaaa-agtttttccgttcaaaacttc 383

                                                                       
Query: 184 ttttctctgatggacaagccaccatggcccaactgaacacaacactcttgaatccaggct 243
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 t---ctctgatggacaagccaccatggcccaactgaacacaacactcttgaatccaggct 440

                                                     
Query: 244 cttcaaagtgtcccatccaactctccctgaacgatattcttt 285
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcaaagtgtcccatccaactctccctgaacgatattcttt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 794
Length adjustment: 9
Effective length of query: 388
Effective length of database: 785
Effective search space:   304580
Effective search space used:   304580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |