BAC Information

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BAC

Clone NameMSMg01-487G15
Chromosome6 (Build37)
Map Location 133,088,704 - 133,089,379
singlet/doubletsinglet
Overlap genenone
Upstream genePrb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487G15.T7 (MSMg01no487_g15.b1)MSMg01-487G15.TJ (MSMg01no487_g15.g1)
ACCAG566383AG566384
length1,157761
length of high quality
(start - end)		---677 (79 - 755)
definitionCHROMAT_FILE: MSMg01no487_g15.b1 PHD_FILE: MSMg01no487_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:01 2005CHROMAT_FILE: MSMg01no487_g15.g1 PHD_FILE: MSMg01no487_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCACTCGACATCAGTAGGGTCGCTGGTGATGGGATCGGAAAATTTCCCA
CATAGGTGTGCGGGAGGTTTGAGAAGAATATCTCCTCAATGATAAGTGAA
GGGTGAGTGGGGAGTCGTGCTTGTCGTCAGGTGAGAGATCATGTAGTGAT
CTACTCTTTAGACGAGTATATATGTGCACGGGCGTCGGTCGANCTGCCGC
ACGTGCACCGTCTTGTAGTATAGAGAAGACCGTGACGATAATAACTGGTG
TTGTCGTCGTCTGCCAGGTTGGAGTGTGGAGACGCACAACGCGCCCCCGC
TGTACTCNTCTTGGCGCATTGCTAGTAGATAGGAGTACGAGACGCCGCAG
CTTCGATAGAGTACATAATACGCGACGCGGCGCGCACGTGCATATCGTGA
CTGATTGTAGGTGTGACCCGATCTGAGTAAACTCCGCATGCACTGCTTGC
GTGAACCTCACACGCTCTGTCGCGAAGCTTGATATATATCGTCGAGCGGC
GCGTAGTATGCTATGTGCACTGTTATATTCTCGCAACACGCGTATCCACT
CGCCAGTCTCTAGTCGTATCCCGCGCCGAGCTGTATGCAGGCGAGCAAAG
ATCTACGCCACTCGCTTGTATGTTGCGCGCCACCGCATCGCGTCTCTGTC
TGTCCGCCACTTCCTCCCACCACCCAGTCTGCCTCAATTGTCGTGAGGAG
ATGATCGTCGGTTTTCCGCGGCGATTCTATTCCGCACTAATTATGTTTAG
AGGTGAGGCCTCGGTCGGGAGTCCGCGCGGGGACGTCCGCCTATCTGCTC
AATCGATTCGTCCTGATAAGACGGGCAAGGCCAAGAATGCCGAGATTCGA
TTAGATCATGTCGCCCGCACGAACTCGTCTATACCCCGTTCATACCGCGA
CNCGCTCGAATATCTAGAGTGATATGAAGCGCGTGTTGTTGACATGTACG
ATACTCGNCACCCACGCCGGCTTGCACTACGGCTCCACTACATATCTANA
ATCACACGTCGCGCGCTATGATCGTAGCATAAGGTGCGATACTGATCCAT
ACACGTAGTCATTGCGCGCGTGACATTATAGCGAGATAAGCTCACGCGTN
TGTCTGCCGCGCGTGATGCGTACATACGAGTAGCTCTCCCAGCACGTCGT
ATATGTG

NNTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGGAACTACTAAGGCAAA
CTTCACCAACAAAGTGCAAGAGATAAAAGGGAGAATCTCAGACATTGAAG
AAATAGACACATTGTTCAAATAAAAAGTTAGAAATAAACACCTGACACAA
AACTGTAAGAAACATTGGATAGTATGAAAAATTAAAATATTAGAATAATA
AAAATACGGAAAGAGAAGAAACTGGGGTTATAGGTAAAGATAATATGAAT
AAAATCAGAGATACTTTTAACATTAATAAGGTGATTTGTACAAATGAAAA
GGAATACACATACTTCCTTAGATGGATTGGAATTATATTCAACTTGCCAC
AGAGTAATCAAAGCAATAAATTGTCAGAACAAAATAATATTAAAAGCTAA
AAGGGGAGACTAAGGAACATAAAACTGATCAGAATTAAATCTGCATTCTC
TTTGAGGGCTGTAAGAGCCAGAAGGGCCCAGATATGTCTCCTTCACTCTC
ATGACACAAAAGCCAATAATGTTGGCTATAATAGTCAGGAAAATTTTCAA
TCACCAGAAATGGAGTAATGAGATATTTAATGATGAAACCAAATTTAAGC
CAATGATGTACTGACATTGAAGCAAATCTCTAATGTTTAAATTTTTGAAC
ACTAACATGTCTACGCTCTTCTTATCAAGGTAGGGGAACTTTGGCTATAT
CTTTAGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_g15.g1 MSMg01no487_g15.g1 CHROMAT_FILE:
MSMg01no487_g15.g1 PHD_FILE: MSMg01no487_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:01 2005
         (677 letters)



>mm_chr6_133088504_133089580
          Length = 1077

 Score = 1027 bits (531), Expect = 0.0
 Identities = 642/679 (94%), Gaps = 6/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaggaactactaaggcaaacttcaccaacaaagtgcaagagataaaagggagaatct 60
           ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacagggactaggaaggcaaacttcaccaacaaagtgcaagagataaaagggagaatct 260

                                                                       
Query: 61  cagacattgaagaaatagacacattgttcaaataaaaagttagaaataaacacctgacac 120
           ||||||  ||||||||| | |||||| ||||||||||  ||| |||||||| ||||| ||
Sbjct: 261 cagacacggaagaaatacatacattggtcaaataaaat-ttaaaaataaactcctgatac 319

                                                                       
Query: 121 aaaactgtaagaaacattggatagtatgaaaaattaaaatattagaataataaaaatac- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 320 aaaactgtaagaaacattggatagtatgaaaaattaaaatattagaataataaaaataaa 379

                                                                       
Query: 180 ggaaagagaagaaactggggttataggtaaagataatatgaataaaatcagagatacttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaaagagaagaaactggggttataggtaaagataatatgaataaaatcagagatacttt 439

                                                                       
Query: 240 taacattaataaggtgatttgtacaaatgaaaaggaatacacatacttccttagat-gga 298
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 440 taacattaataaggtgacttgtacaaatgaaaaggaatacacatacttcctta-attgga 498

                                                                       
Query: 299 ttggaattatattcaacttgccacagagtaatcaaagcaataaattgtcagaacaaaata 358
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct: 499 ttggaattatattcaacttgccacagaataatcaaagcaataaattatcagaagaaaata 558

                                                                       
Query: 359 atattaaaagctaaaaggggagactaaggaacataaaactgatcagaattaaatctgcat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 559 atattaaaagctaaaaggggagactaaggaacataaaactgatcagaattaaacctgcat 618

                                                                       
Query: 419 tct-ctttgagggctgtaagagccagaagggcccagatatgtctccttcactctcatgac 477
           | | ||||||| |||||||| ||||||||||| |||||||||||||||| |||||| |||
Sbjct: 619 t-tactttgagagctgtaagggccagaagggcgcagatatgtctccttccctctcacgac 677

                                                                       
Query: 478 acaaaagccaataatgttggctataatagtcaggaaaattttcaatcaccagaaatggag 537
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 678 acaaaaaccaataatgttggctataataatcaggaaaattttcaatcaccagaaatggag 737

                                                                       
Query: 538 taatgagatatttaatgatgaaaccaaatttaagccaatgatgtactgacattgaagcaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taatgagatatttaatgatgaaaccaaatttaagccaatgatgtactgacattgaagcaa 797

                                                                       
Query: 598 atctctaatgtttaaatttttgaacactaacatgtctacgctcttcttatcaaggtaggg 657
           ||||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||||
Sbjct: 798 atctctattgtttaaatttttgaacactaacatgcctattctcttcttatcaaggtaggg 857

                              
Query: 658 gaactttggctatatcttt 676
           ||||||| |||||| ||||
Sbjct: 858 gaacttttgctataccttt 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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