Query= MSMg01no488_h01.b1 MSMg01no488_h01.b1 CHROMAT_FILE:
MSMg01no488_h01.b1 PHD_FILE: MSMg01no488_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:22 2005
(671 letters)
>mm_chr6_114827185_114828258
Length = 1074
Score = 1191 bits (616), Expect = 0.0
Identities = 652/668 (97%), Gaps = 9/668 (1%)
Strand = Plus / Minus
Query: 13 gaattcaacacttacagtgcagtt-ctactgagtgtacactccctttacaccgcagagaa 71
||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 863 gaattcaacacccagagtgcagttcctactgagtgtacactccctttacaccgcagagaa 804
Query: 72 gctggggaccctctacataatacaaaaggatttagggcttgtgtgtggccaccatgtggg 131
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gctggggaccctctgcataatacaaaaggatttagggcttgtgtgtggccaccatgtggg 744
Query: 132 ggaggctgagcttcaaagggggcacaggggaaaacc--aaagagagaggtcttgaaggag 189
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 743 ggaggctgagcttcaaagggggcacaggggaaaaccaaaaaaagagaggtcttgaaggag 684
Query: 190 gaggcaggtttgggggcgcaatgctgagaggccagggtaaactcagcagctcacctctgt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaggcaggtttgggggcgcaatgctgagaggccagggtaaactcagcagctcacctctgt 624
Query: 250 cctaggggggctcgctcacctttccatagctcgaccagtgctccaaaggccaccgtgttc 309
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 cctaggggggctcgctcacctttccatagcttgaccagtgctccaaaggccaccgtgttc 564
Query: 310 ggccagctagttagacagtttaacttaaacaagcaaacaaactcccaaaacagtgctttt 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggccagctagttagacagtttaacttaaacaagcaaacaaactcccaaaacagtgctttt 504
Query: 370 atttattcatggcaaaggtttatttccttcctgacccaatcagaattgctttcctgtggt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atttattcatggcaaaggtttatttccttcctgacccaatcagaattgctttcctgtggt 444
Query: 430 catcagttgcttactcattgataattcatttgaagctcaggttaatgccccctccccctt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catcagttgcttactcattgataattcatttgaagctcaggttaatgccccctccccctt 384
Query: 490 tctttgtccctgccttgctgaagatgggacctggttagacaatctgagctataaccaacc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctttgtccctgccttgctgaagatgggacctggttagacaatctgagctataaccaacc 324
Query: 550 ctccggtggagtctgtagactgaaagctggaaatgtgtgcatgtgtgtactggagatttt 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctccggtggagtctgtagactgaaagctggaaatgtgtgcatgtgtgtactggagatttt 264
Query: 610 gaatttccaacagcagcagcagcacacttgataggtaattgatatgacgac------tcc 663
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 263 gaatttccaacagcagcagcagcacacttgataggtaactgatatgacgacgacgactcc 204
Query: 664 tcctcctc 671
||||||||
Sbjct: 203 tcctcctc 196
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space: 703304
Effective search space used: 703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_h01.g1 MSMg01no488_h01.g1 CHROMAT_FILE:
MSMg01no488_h01.g1 PHD_FILE: MSMg01no488_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:22 2005
(637 letters)
>mm_chr6_114667845_114668881
Length = 1037
Score = 1106 bits (572), Expect = 0.0
Identities = 623/640 (97%), Gaps = 5/640 (0%)
Strand = Plus / Plus
Query: 1 tctttttactctttgcagaaaaa-aaaactagggcaggccaccaggagaggctgacctgg 59
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttttactctttgcagaaaaacaaaactagggcaggccaccaggagaggctgacctgg 260
Query: 60 gagtcttctgcatgaggtgaagtagacagggagcccaaagctctagccactgttcattac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcttctgcatgaggtgaagtagacagggagcccaaagctctagccactgttcattac 320
Query: 120 ctgtctgctcaggctctgacgcccctctccccagttttcagccttctatttttcctttta 179
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctgctcaggctctgacaccc-tctccccagttttcagccttctatttttcctttta 379
Query: 180 agatttatttttattattttaatgatgcatatttgtgtgagtgactgtgtgtggtgtatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agatttatttttattattttaatgatgcatatttgtgtgagtgactgtgtgtggtgtatg 439
Query: 240 cccctgaatacaagtgccgacagaggtcagagtatccaatggccctggagctggggttac 299
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 cccctgaatacaagggccaacagaggtcagagtatccgatggccctggagctggggttac 499
Query: 300 agacagttgtaggcagcttgatgtgggtgctgggaatcaaactcagggaggtcctcagga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agacagttgtaggcagcttgatgtgggtgctgggaatcaaactcagggaggtcctcagga 559
Query: 360 agaaagcatgtgctcttaaccactgagccatctttctccccctgagggggtg-tggtaaa 418
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 560 agaaagcatgtgctcttaaccactgagccatctttctccccctgaggggg-gctggtaaa 618
Query: 419 gatactcaactcttgtgccctgactgcctagagaaggtccagcaggagggcattgcctga 478
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 619 gatactcaactcttgtgccctgtctgcctagaggaggtccagcaggagggcattgcctga 678
Query: 479 ggtgtagcctaggaaagagcttccttcttctccctccccacaggctctgtggccctcagc 538
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 679 ggtgtagcctaggaaagagcttccttcttctccctccccacaggttcggtggccctcagc 738
Query: 539 tagatggtggcagaaaaatgggttggtccacagttgccctatgttggccactgtcctttg 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tagatggtggcaggaaaatgggttggtccacagttgccctatgttggccactgtcctttg 798
Query: 599 tgacctg-tcatactgtccatcctctccatacaaccagcc 637
||||||| | ||| |||||||||||||||||| |||||||
Sbjct: 799 tgacctggttatagtgtccatcctctccatacgaccagcc 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
